Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1340 ATGATGACTCCTGAGAGTTTCTACTTGAAACTCGCCGAGTTGTTGGAGTCTTCTGGACTGAGTCTCATTTTCAATGTCAGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCCGGTTGGTCGAGAAAAGAAATGGGGTGAAGTAGTCTTTGCCCTGAAATTGGAAGGGAATAGTATGAAGTTATGTGCTCAAGTTGAAAAGCTGTATGCACATATTCTCTACCAGTTTGAGAAATTGTACTTCTACAGGCGTCCTGCAAAGCAAGCTGGATCTAACAGCACCAAAGGATAG 321 0.433 MMTPESFYLKLAELLESSGLSLIFNVRETLLDLYLFYLEVTRRGGYHPVGREKKWGEVVFALKLEGNSMKLCAQVEKLYAHILYQFEKLYFYRRPAKQAGSNSTKG* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1340 106 SMART ARID_2 1 87 - -
Gso10g1340 106 SUPERFAMILY ARID-like 3 94 IPR036431 GO:0003677
Gso10g1340 106 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 103 - -
Gso10g1340 106 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 4 103 - -
Gso10g1340 106 SMART bright_3 2 92 IPR001606 GO:0003677
Gso10g1340 106 Pfam ARID/BRIGHT DNA binding domain 5 87 IPR001606 GO:0003677
Gso10g1340 106 ProSiteProfiles ARID domain profile. 1 91 IPR001606 GO:0003677
Gso10g1340 106 Gene3D - 2 105 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1340 Gso-Chr10 39737742 39740176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1340 31 92 ARID Transcription Factor Family AT1G76110 37.097 4.26e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso10g1340 ARID 5.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1340 - - gsj:114371008 209.534