Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1339 ATGGCGTCTTTCGACCCGAACGTAGATTCAAGTAATTCCGACACGTTGCGAGAATCCAATCACAAGAAGCGCAGAAAAATCGGAGACCACGCCGCCGGCGATCTCGATTTCGCCGCCGCCGTCCCTTGGAGATCCGACGTGGAGCAGCGGATCTACTCCCGCCGCCTCGTGGAGGCTCTCCGCCGCACTCCGTCATCGGCGACCAAGCCTAGAGCCGCCGGCCAGGTCCGCGAGACCGCCGACCGCGTCCTCGCCGCCACCGCCAGAGGCCGAACGAGGTGGAGCCGCGCGATTCTCAAGCGCTGGAGGAAGCTCCGCATGCAGCACAAGAAGGCGAAGGCGGCATCGTCCAACAACGGTTTGAAGAGAACGAGGATTGGAAACGGAGAGAGGAGGAACCGGTTACCGGCTGTTCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTTTCGTTCCCGAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTGGCCGAACTACTCGCCGGCGCCGCGCCGGCAAATCTCGCCGGCTCCGCGTTGAGTTGA 600 0.6233 MASFDPNVDSSNSDTLRESNHKKRRKIGDHAAGDLDFAAAVPWRSDVEQRIYSRRLVEALRRTPSSATKPRAAGQVRETADRVLAATARGRTRWSRAILKRWRKLRMQHKKAKAASSNNGLKRTRIGNGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALAELLAGAAPANLAGSALS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1339 199 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 198 IPR044660 GO:0006355
Gso10g1339 199 CDD bHLH_AtIBH1_like 130 179 IPR044549 GO:0006355
Gso10g1339 199 MobiDBLite consensus disorder prediction 1 31 - -
Gso10g1339 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Gso10g1339 199 PANTHER TRANSCRIPTION FACTOR BHLH150 15 198 - -
Gso10g1339 199 MobiDBLite consensus disorder prediction 15 31 - -
Gso10g1339 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1339 Gso-Chr10 39727781 39728790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1339 1 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 43.814 4.43e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1339 - - gmx:100783462 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1921 19 47919282 47920196 Gso10g1339 10 39727781 39728790 PCT
Gso3g1960 3 45135758 45136663 Gso10g1339 10 39727781 39728790 PCT
Gso10g1339 10 39727781 39728790 Gso19g1921 19 47919282 47920196 PCT
Gso10g1339 10 39727781 39728790 Gso3g1960 3 45135758 45136663 PCT