Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1324 ATGCCGGTGAAGAAGTATTACTGCGATTACTGCGACAAGCTATTCCAAGACACACCAGCAGATCGGAAACGACACGTTCAGGGCATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAACAAATCCCTCCGATTCCCAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGCTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTCCAGCAGCCGCCAATCGTAACCACACCGTCGCCTTCACCAGTTCATGGGTTTTCACAGCACCAAGAACGTGAATGGGTTTGTTATTGGGTTTCAGCAGCAAGGGGAGGCAAATGGAGTTTATGGACCTATTCATCGAAAGCACTCTTAGTTTTTGTCAACATCTTATCTTTTTCATCTTTATTTCTAAGTTGA 438 0.4658 MPVKKYYCDYCDKLFQDTPADRKRHVQGIQHHQAKARWYDSFKQQQIPPIPNRPLCFHFVNTGFCRYGDSCKYLHPVPNNNVQQPPIVTTPSPSPVHGFSQHQEREWVCYWVSAARGGKWSLWTYSSKALLVFVNILSFSSLFLS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1324 145 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
Gso10g1324 145 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Gso10g1324 145 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Gso10g1324 145 PANTHER NUCLEASE-RELATED 1 89 - -
Gso10g1324 145 Gene3D Classic Zinc Finger 3 45 - -
Gso10g1324 145 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Gso10g1324 145 SUPERFAMILY CCCH zinc finger 51 79 IPR036855 GO:0046872
Gso10g1324 145 SMART c3hfinal6 51 77 IPR000571 GO:0046872
Gso10g1324 145 Gene3D - 46 116 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso10g1324 zf-U1 2.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1324 K13152 - gmx:100527203 197.208