Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1321 ATGGGTGCTGATCTTAAAGCTGAATTGTCCGGGAAAACTTTTGTTTTTGGTCTTAAGGTTTGGCAAATAATTGGAATTGCAGTTGGATTGTTTATTGTTGTCATCCTCTGTGTGCTCCCATTTTGCCTTAATTCAAGGAAGAAAACTAGAAGAGCCAGGAACAGGGTTCCTGCTACTCATATTCCTCCTGTCTCGAAGGAAATCACGGAAGTGCGGGTTGAGCAAGTGCCCGCGAATGGATTCGTTCCTCGCGAAGGAATACTTCTTACCATTCATGATAAGTCCAGTGACAAGGAATCAGACAAGGTTATGCTTCATTTAGGTGTTGGGAAGAAGAAGCATGGGGATAGTGGCAGTCATCACTCGGATTCGTTTCATTACTTGGATGGAGGTGGGTCACAATCAGGAGAAGAAATTAGCTCTGGCACGGTTGGAATTTACATGCCCTCTTCGTCACACCCTATAACAGCTCCTTCACCACTCTCAGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACACTGAGGGATCTTGAACTTGCCACGAACCGTTTTTCAAAAGAAAATGTGATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATTAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGTTACTGCATTGAGGGGACTCACAGGATGTTGGTCTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGACATCATGGATATCTTACCTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCTAAGGGGCTTGCATATTTGCATGAAGCGATCGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGATGTTTATAGCTTTGGTGTTGTGCTATTGGAAGCAATAACTGGAAGAGATCCAGTTGACTATGGTCGTCCAGCACAGGAAGTTAATATGGTTGATTGGCTGAAGACAATGGTTGGAAACAGGCGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCTACCAGAGTTTTGAAAAGGACGCTCTTAACGGCTTTAAGATGTGTAGATCCAGATTCCGAGAAAAGACCCAAGATGGGCCAAGTTGTGCGTATACTTGAGTCAGAGGAGTACCCTTTAGCAAGAGAGGACCGTAGGCACAGAAGAAATCGTGGGGTTAACTCAGAAATTGAATCCCATAAGGATAATTCTGACACAGATGGAAGTGACATTCAGGGCTCTAGATCAGAAAGCGGAAGGTAA 1521 0.4405 MGADLKAELSGKTFVFGLKVWQIIGIAVGLFIVVILCVLPFCLNSRKKTRRARNRVPATHIPPVSKEITEVRVEQVPANGFVPREGILLTIHDKSSDKESDKVMLHLGVGKKKHGDSGSHHSDSFHYLDGGGSQSGEEISSGTVGIYMPSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGKSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNMVDWLKTMVGNRRSEEVVDPNIEVKPSTRVLKRTLLTALRCVDPDSEKRPKMGQVVRILESEEYPLAREDRRHRRNRGVNSEIESHKDNSDTDGSDIQGSRSESGR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1321 506 MobiDBLite consensus disorder prediction 466 494 - -
Gso10g1321 506 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1321 506 MobiDBLite consensus disorder prediction 466 506 - -
Gso10g1321 506 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Gso10g1321 506 SMART serkin_6 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1321 506 MobiDBLite consensus disorder prediction 112 145 - -
Gso10g1321 506 PANTHER OS01G0323000 PROTEIN 3 502 - -
Gso10g1321 506 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Gso10g1321 506 SUPERFAMILY Protein kinase-like (PK-like) 172 465 IPR011009 -
Gso10g1321 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gso10g1321 506 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 502 - -
Gso10g1321 506 Pfam Protein kinase domain 189 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1321 506 Gene3D Transferase(Phosphotransferase) domain 1 264 476 - -
Gso10g1321 506 CDD STKc_IRAK 194 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1321 Gso-Chr10 39514485 39519190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1321 165 462 Trihelix Transcription Factor Family AT1G70460 50.495 7.55e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso10g1321 Pkinase 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1321 - - gmx:100778269 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1321 10 39514485 39519190 Gso3g1940 3 44961710 44966923 PCT