Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1312 ATTTTGATTGAAGGCGCATCCCCTTCTCCCTTTCAAATTTTGGTCTCCACTACGAATTCGCACAAACCCTACCCACATCTTTTTTTTTTTTTTTCTTTTGCAGTTGCTAGGCACCAAGATGAAAGTCAACATCTTGCATGGCATGCTGTTGCTTCATGGACTTGGGATGCCCAGGATGAAACCTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGACTGCCCATTGATTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTGGCAGTTTAAAGGATGA 372 0.4516 ILIEGASPSPFQILVSTTNSHKPYPHLFFFFSFAVARHQDESQHLAWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1312 123 CDD RING-H2_APC11 59 121 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Gso10g1312 123 PANTHER RING BOX 44 122 - -
Gso10g1312 123 SUPERFAMILY RING/U-box 46 122 - -
Gso10g1312 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 123 IPR013083 -
Gso10g1312 123 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 44 122 - -
Gso10g1312 123 ProSiteProfiles Zinc finger RING-type profile. 73 116 IPR001841 -
Gso10g1312 123 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 46 122 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1312 Gso-Chr10 39347147 39349997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1312 73 116 C3H Transcription Factor Family AT1G72220 41.304 5.17e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1312 K03358 - gmx:100775777 228.794