Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1310 ATGCCTTTATATGAGTTATACCGGCTGGCCAGAGAGAAGCTTGGTAAAGAAACTACCAGCACACGTGCTCCTGATCAATGTTCCTCGCCAGAGAATGATTTTTTTGAGCTGGTTTGGGAGAACGGTCAGATTTCGAGCCAGGGTCAGTCCAGTAGAGTTAGAAGGAGCCCCTCTTGCAAGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCAAAGGCTAGGGATAAAGATGTAGGATATGGTAGCTACACAAGGTTGGGGAAATTTGGGGATTTAGACTCTGGATTAAATGAAATTCCAATGTCGGTGCCATCCAGTGAAGTGGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTGGATTATCCATCAATAGATGGTTCTTTGCAACAAGAGTATGGTTCTGATTTCCTTCCCGCCTCAAACAGTTTTACTCTATTGGATAAAAAAAGTAATGGCAATATGGCGTTTAGGGATTCTCAGAAAACTTCTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGGACAGGTTGAGACTGCCAGACCTAAAGCTAGTAGCACCAGTCAGTTATTCCCCCCATCATTGCATCAGTGTCAAACATCTTTTGTTTCGTCTAGATCCAGAGCATCAGATATAACTGAAAATAACAATACGAGTAATGCAAACCAGGATGCGTCTTATGGCAAAATTACTCATATTCTATCTTCCTCAAGTGATTTTTCTAACGCAAAGGTGCAGAAGTGTGATCCACCTATGAATAGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTTCATAGCGTTGGCCTGAAGTCTGGTTTGTCTTCATCAAGATCAGACAGTATGGAAATGAAGAATAAAGGTGCTGCTGCAACTAGCAGCAATCCTCCTGAATCAATTCTTGTTGATTCAAGTGTTGAATGTTTAAAGGAACCGATCATACAATGCCAGCAGGTTGTGGAGCAATCCAAGGCTGATGTGAACTCTTTGCTGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCAGAGCCTGCTGGTAAAGAGAGTGCCGCTAAGATTGATCTAATTCCCAATCAAGTTCCTGGTGACAATGGCACTAAAGGACAGACAGCTGCTGAAAAAAGTAAGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTACAGACCAAGGTTCAGAAGAGCCAAATCAAAATTTGAAGCGAAAAAGAAAAGACACTGACGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGCTGGTGCTAAAAAGACAGCTGGTGGGCGAGGAGGTGCAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAAGCGAAGAGATAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCCTGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGATGGGAATGCCTGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCACATATGTCTGGATCTACAGCTTTTCATGGGATGGCCAGAGCAAATCCTCCAGGGTTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCGCGAGCTCCTATGTTTCCTTTTTCAGGAGGACAAATGCCAAATGTTGACCCACAAGTTAAGCAAAGCACTGGTGGCCGTGACTCAACTAGTCAGATGCCTACCCAGTGTGAAGCAGCAGCTGTTGGATTTGAGCAATCTACTTTGGCTCATAATAACGGTCATGCAACCAAGGCTAATGACAATGGATCTGTTAATCCTGGAACTGGCAGATAA 2076 0.4403 MPLYELYRLAREKLGKETTSTRAPDQCSSPENDFFELVWENGQISSQGQSSRVRRSPSCKSLPSHCLPSHSPKARDKDVGYGSYTRLGKFGDLDSGLNEIPMSVPSSEVDFCQDEDVLPWLDYPSIDGSLQQEYGSDFLPASNSFTLLDKKSNGNMAFRDSQKTSEEQGNVFKGSSAGQVETARPKASSTSQLFPPSLHQCQTSFVSSRSRASDITENNNTSNANQDASYGKITHILSSSSDFSNAKVQKCDPPMNSNGSSSTIMNFSHFARPAAMVRANLHSVGLKSGLSSSRSDSMEMKNKGAAATSSNPPESILVDSSVECLKEPIIQCQQVVEQSKADVNSLLPKSVEQNAVPSKQSEPAGKESAAKIDLIPNQVPGDNGTKGQTAAEKSKEPAVASSSVCSGNGTDQGSEEPNQNLKRKRKDTDDSECHSEDVEEESAGAKKTAGGRGGAGSKRSRAAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMPAPHMAPFSPMGVGMHMGYGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVAHMSGSTAFHGMARANPPGFGLPGQGHPMPMPRAPMFPFSGGQMPNVDPQVKQSTGGRDSTSQMPTQCEAAAVGFEQSTLAHNNGHATKANDNGSVNPGTGR* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1310 691 SMART finulus 467 516 IPR011598 GO:0046983
Gso10g1310 691 MobiDBLite consensus disorder prediction 156 194 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 666 691 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 381 416 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 634 691 - -
Gso10g1310 691 PANTHER TRANSCRIPTION FACTOR PIF3 1 678 - -
Gso10g1310 691 Pfam Helix-loop-helix DNA-binding domain 465 511 IPR011598 GO:0046983
Gso10g1310 691 MobiDBLite consensus disorder prediction 288 315 - -
Gso10g1310 691 Gene3D - 456 519 IPR036638 GO:0046983
Gso10g1310 691 PANTHER TRANSCRIPTION FACTOR PIF3 1 678 IPR044273 GO:0003700|GO:0006355
Gso10g1310 691 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 521 IPR036638 GO:0046983
Gso10g1310 691 MobiDBLite consensus disorder prediction 351 476 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 417 446 - -
Gso10g1310 691 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Gso10g1310 691 MobiDBLite consensus disorder prediction 45 65 - -
Gso10g1310 691 CDD bHLH_AtPIF_like 461 523 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 635 657 - -
Gso10g1310 691 MobiDBLite consensus disorder prediction 45 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1310 Gso-Chr10 39304485 39309347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1310 1 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.467 1.52e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1310 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1310 K12126 - gmx:100820151 1291.17