Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1307 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTCAATCACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTATCTAAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGTATTGACCCAACCACACACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGAATATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTAATTTGGTTGATCATCATCAGCCACCAAAAACCATGCCTAATTCTTCATCAGAGAGATACCCTCTTGAAGTTTCCACTACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGCACCACCACCACCACCTGCCACGAAAACAACAACAACAACACTTCTGATTTGGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAGCATGGCCCTCTCTTCAAACCCCAACACCTCTCTTTGTTTCATTCTACCCTCCACTTCTTCAGACATTAATAATAACAACTCCATCATAACCTCCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACATGTGAAGCTCCAATCTAATAACAACAACCCTTCTTCCATTTCATCTGATGGGGTTCAAAACTGGGAAACAAGTAACAACACAAACAAAAACAATGGGAATATGCAGTTACAAAGTAGCACAAACTACCTTGACAGCACGTGGGGGGTGGCAGAGTCTATGAAGATTGTTAACATTAACAAAGAGGCTCAAGTAGTGCCTCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTTAACACCCCGTTTATTCTGGGAAACAACACAGCGCAGAATCATCAAATTCAAACCTCTCAATCTATCTACACTGAGGTTATTAAACCAGAAACAGGTTTCATAATAGACGAGTCATGTACTAGTAATTGGCACCATCATCAGCCACCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA 1293 0.4323 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPTTHKPLSEVENDKDMNMMPPSTDKSTQKASVGSNEVVSNLVDHHQPPKTMPNSSSERYPLEVSTTSSTQELFLDRFGTTTTTCHENNNNNTSDLVGSYFSFQHLNYGTTTSMALSSNPNTSLCFILPSTSSDINNNNSIITSSSMLPSIFPTQHVKLQSNNNNPSSISSDGVQNWETSNNTNKNNGNMQLQSSTNYLDSTWGVAESMKIVNINKEAQVVPLQAEQEDLKWSEYLNTPFILGNNTAQNHQIQTSQSIYTEVIKPETGFIIDESCTSNWHHHQPPPAFQLSDIYSKDLQRFSVTFGQTL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1307 430 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso10g1307 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso10g1307 430 SMART sant 13 63 IPR001005 -
Gso10g1307 430 SMART sant 66 114 IPR001005 -
Gso10g1307 430 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso10g1307 430 PANTHER HOMEODOMAIN-RELATED 1 423 - -
Gso10g1307 430 CDD SANT 17 61 IPR001005 -
Gso10g1307 430 MobiDBLite consensus disorder prediction 164 183 - -
Gso10g1307 430 PANTHER MYB DOMAIN PROTEIN 55 1 423 - -
Gso10g1307 430 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g1307 430 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso10g1307 430 MobiDBLite consensus disorder prediction 283 314 - -
Gso10g1307 430 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso10g1307 430 Gene3D - 11 67 - -
Gso10g1307 430 CDD SANT 69 109 IPR001005 -
Gso10g1307 430 MobiDBLite consensus disorder prediction 121 152 - -
Gso10g1307 430 Gene3D - 69 141 - -
Gso10g1307 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1307 Gso-Chr10 39241672 39244124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1307 1 430 MYB Transcription Factor Family AT1G09540 47.826 3.60e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1307 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1307 K09422 - gmx:100790184 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1894 19 47664539 47666813 Gso10g1307 10 39241672 39244124 PCT
Gso3g1930 3 44840744 44842821 Gso10g1307 10 39241672 39244124 PCT
Gso10g1307 10 39241672 39244124 Gso19g1894 19 47664539 47666813 PCT
Gso10g1307 10 39241672 39244124 Gso3g1930 3 44840744 44842821 PCT