Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1302 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTCGTGGGAAGAAGTGGAACTGAAATGCTCACTAATGAGGCTGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATAAAACCTGTATATGTTTTTGATGGGAAGCCACCTGATTTGAAGAAACAAGAGCTTGCCAAACGTTACTCCAAGAGAGCTGAGGCTACTGAAGATTTGTCAGAAGCCTTAGAGACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGTAAAGCTGGAAAGGTTTATGGTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTCCTAAATTTCTTCGCCACCTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTCGAAGTTGCGAAGATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTGAAAATATACTGGAGAACCTAAACAAAGAGAGGTACCAGATACCCGATAATTGGCCATATCAGGAGGCTCGGCGGCTTTTTAAAGAACCATTGGTCATAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTAAATGAGAATGGCTTCAACAGGGATAGAGTGACTAAGGCAATAGAAAAAATTAAAGTGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAGGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAG 1149 0.4169 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPLVITDEKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANPSVPIKRKETPVNNAKETNKKTKAGGGKKKK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1302 382 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Gso10g1302 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Gso10g1302 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Gso10g1302 382 SMART 53exo3 29 306 IPR002421 GO:0003677
Gso10g1302 382 SMART xpgn3 1 108 IPR006085 GO:0004518
Gso10g1302 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 372 IPR006084 -
Gso10g1302 382 Coils Coil 99 119 - -
Gso10g1302 382 CDD H3TH_FEN1-Euk 222 290 - -
Gso10g1302 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Gso10g1302 382 PANTHER FLAP ENDONUCLEASE 1 1 372 - -
Gso10g1302 382 MobiDBLite consensus disorder prediction 339 382 - -
Gso10g1302 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Gso10g1302 382 Gene3D - 10 222 - -
Gso10g1302 382 Gene3D - 223 286 - -
Gso10g1302 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Gso10g1302 382 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Gso10g1302 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Gso10g1302 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Gso10g1302 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Gso10g1302 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Gso10g1302 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Gso10g1302 382 CDD PIN_FEN1 4 331 - -
Gso10g1302 382 SMART xpgineu 147 219 IPR006086 GO:0004518
Gso10g1302 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1302 Gso-Chr10 39085680 39091170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1302 1 361 Core DNA Replication Machinery Family AT5G26680 88.920 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1302 K04799 - gmx:100808044 715.687