Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1299 ATGCCATGGTGGTCTCTGGTCACACTCACAGTTGTGGTGGTGAGTTTGAAGAAGACTAGAGGGGGTTGGGTTCCATGGTTGTTGTTGTTGCCCACACCTCTTTTCTTTATTTTAACCCTTAGCCTCATTGCTTCCTTCCCTTTGTTCCCACTCTTTCGCTTTCAAGTGCAGTTTGGAGTGAAAATGTCTACCTCAAGGCCTAGCCAATCATCCAGCAATTCAAGGAGATCAAGACATAGTGCTAGAATGGCTCAGGCAACTGTAGATGCAAAAATCCATGCAACTTTTGAGGAGTCCGGTAGTTCCTTTGATTACTCCAGTTCGGTGCGCGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGACAAAGTTACAACAGCTTACCTCAATCACATGCAGAGAGGCAAGATGATTCAGCCTTTTGGTTGCTTGTTGGCCATTGATGAGAAAACATGTAAGGTCATTGCATACAGTGAGAACGCGCCCGAAATGCTGACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTCTATTCACTGCACCAAGTGTTTCTGGATTGCAGAAGGCTCTAGGATGTGCGGACGTTTCGCTTCTTAACCCCATACTTGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTGTCCATCGCGTCACTGGTAGTTTGATTGTTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCATTGCCTAGTGGGAACATGGAAAGACTATGTGATACTATGGTTCAGGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCCGGTCTTGAGCCATATCTGGGTTTGCACTATCCAGCCACCGACATTCCCCAGGCTTCACGCTTTTTATTTAGGAAGAACAAGGTTCGTATGATAGTTGACTGTCATGCAAAACACGTGAGGGTTCTTCAAGATGAAAAACTCCAATTTGATTTGATTTTGTGTGGTTCCACCTTAAGAGCTCCTCATAGTTGCCACGCGCAGTACATGGCTAACATGGATTCAATTGCTTCCCTGGTTTTGGCAGTTGTAGTCAATGACAACGAAGAAGATGGGGACACTGATGCTGTTCAGCCACAAAAGAGGGAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCGTCCATGTGCACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAGGCACTCTTGTGTATGCTGATGCGAGATGCACCCCTAGGAATTGTATCAGAGAGTCCTAATATAATGGATCTAGTTAAATGTGATGGAGCTGCCCTCATATACAGGAACAAAGTATGGAGATTAGGAGTGACACCAAGTGAACCCCAGATAAGAGAGATAGCTTTGTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTTAGTACAGATAGCTTGTTTGATGCAGGGTTCCCATCGGCTCTTTCTCTGGGTGATGTTGTGTGTGGAATGGCATCTGTTAGAGTAACTGCAAAAGACATGGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAGGCTGGAGAAAAAGATGATAGTAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCAAGGAGTTTACCTTGGAAGGAATATGAAATGGATGCTATTCATTCCTTGCAGATAATACTGAGAAATGCATTCAAAGAAGATACCGAGAGTTTGGATTTAAACGCAAAAGCAATTAATACAAGACTAAGTGATTTGAAGATTGAAGGGATAAACGATTTGAAGATTGAAAGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATCGTTAGGTTGATTGACACAGCAACAGTGCCTATTTTGGCCGTTGATGTTGATGGGCTGGTCAATGGGTGGAACATAAAAATTGCTGAGTTGACGGGTCTTCCAATTGGTGAAGCTACTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTAACTTAGCACTGCTAGGTGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATGGATTCTGGTCCTATTAGTTTGGTAGTAAATGCTTGCGCGAGCAGGGATCTTCGAGATAATGTTGTCGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAGAAGAATGTCATGGACAAATTCATCCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCGCAATCCATTAATCCCTCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGATGAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGATTTTTGGCACCCAGATGGCTGCTTGTCGCCTAAAGAATCAAGAAGCTTTTGTTAATTTGGGCGTCGTACTTAATAAAGCCATGACTGGTTCAGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGTAAGAAATTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCAGAGCTCCAACAAGCATTACATATTCAGCGTCTATCTGAGCAAACTGCTTCGAAGAGATTGAATGCATTAAGTTACATGAAAAGGCAGATCAGGAATCCTTTGTGTGGAATTGTATTTTCCCGGAAAATGTTGGAGGGTACTGACTTGGGAACAGAACAGAAACAACTTCTGCGCACTAGTGCTCAGTGCCAGCAGCAGCTTAGTAAAATTCTTGATGACTCAGATCTTGACACCATCATAGATGGTTACTTGGATCTTGAGATGGCTGAGTTCACCCTGCATGAAGTTCTGGTTACCTCCCTTAGTCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGGGCATATTATGATGGAAACTTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTGGCTGACTTTTTACTTATTTCCATCAATTTCACTCCAAATGGAGGTCAGGTTGTTGTAGCAGGCTCTCTAACCAAAGAACAGTTAGGCAAATCTGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTACCAGAAGTGTTACTGAATCAGATGTTCGGAAACAATGGGCTAGAATCCGAGGAGGGTATTAGCCTACTGATAAGCAGAAAGCTGCTGAAGCTGATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCAGCCCATAATTTGAAAGCTTAA 3576 0.4365 MPWWSLVTLTVVVVSLKKTRGGWVPWLLLLPTPLFFILTLSLIASFPLFPLFRFQVQFGVKMSTSRPSQSSSNSRRSRHSARMAQATVDAKIHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLNHMQRGKMIQPFGCLLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSVSGLQKALGCADVSLLNPILVHCKTSGKPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHSCHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKRERLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVHKEIELEYQIIEKNILRTQALLCMLMRDAPLGIVSESPNIMDLVKCDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTGFSTDSLFDAGFPSALSLGDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLSDLKIEGINDLKIERMQELEAVTSEIVRLIDTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLTLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGIVFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1299 1191 Pfam GAF domain 278 460 IPR003018 GO:0005515
Gso10g1299 1191 Gene3D PAS domain 676 813 - -
Gso10g1299 1191 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1073 1181 IPR003594 -
Gso10g1299 1191 SUPERFAMILY PYP-like sensor domain (PAS domain) 690 797 IPR035965 -
Gso10g1299 1191 CDD HisKA 966 1016 IPR003661 GO:0000155|GO:0007165
Gso10g1299 1191 SUPERFAMILY PYP-like sensor domain (PAS domain) 831 937 IPR035965 -
Gso10g1299 1191 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 1186 - -
Gso10g1299 1191 Gene3D - 259 620 IPR029016 -
Gso10g1299 1191 SMART HKATPase_4 1073 1185 IPR003594 -
Gso10g1299 1191 SMART HisKA_10 961 1026 IPR003661 GO:0000155|GO:0007165
Gso10g1299 1191 CDD PAS 695 801 IPR000014 -
Gso10g1299 1191 SUPERFAMILY GAF domain-like 258 457 - -
Gso10g1299 1191 CDD PAS 828 939 IPR000014 -
Gso10g1299 1191 Gene3D PAS domain 830 942 - -
Gso10g1299 1191 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1023 1175 IPR036890 -
Gso10g1299 1191 ProSitePatterns Phytochrome chromophore attachment site signature. 378 387 IPR013516 -
Gso10g1299 1191 SUPERFAMILY GAF domain-like 469 646 - -
Gso10g1299 1191 Gene3D - 465 637 IPR043150 -
Gso10g1299 1191 Pfam PAS fold 129 245 IPR013654 GO:0006355
Gso10g1299 1191 ProSiteProfiles PAS repeat profile. 817 869 IPR000014 -
Gso10g1299 1191 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 278 450 IPR016132 -
Gso10g1299 1191 PIRSF Phytochrome_conventional 60 1191 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gso10g1299 1191 SMART pas_2 816 885 IPR000014 -
Gso10g1299 1191 SMART pas_2 686 752 IPR000014 -
Gso10g1299 1191 Gene3D PAS domain 136 381 - -
Gso10g1299 1191 Pfam PAS fold 687 801 IPR013767 GO:0006355
Gso10g1299 1191 Pfam PAS fold 817 939 IPR013767 GO:0006355
Gso10g1299 1191 PRINTS Phytochrome signature 193 215 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 293 312 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 378 399 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 489 509 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 574 593 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 607 625 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 687 703 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 706 721 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 779 796 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 PRINTS Phytochrome signature 799 819 IPR001294 GO:0006355|GO:0009584
Gso10g1299 1191 ProSiteProfiles Histidine kinase domain profile. 968 1187 IPR005467 -
Gso10g1299 1191 PANTHER PHYTOCHROME A 62 1186 - -
Gso10g1299 1191 Pfam Phytochrome region 475 648 IPR013515 GO:0006355|GO:0009584
Gso10g1299 1191 Gene3D - 1001 1178 IPR036890 -
Gso10g1299 1191 ProSiteProfiles PAS repeat profile. 684 754 IPR000014 -
Gso10g1299 1191 SMART gaf_1 278 470 IPR003018 GO:0005515
Gso10g1299 1191 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 246 IPR035965 -
Gso10g1299 1191 TIGRFAM sensory_box: PAS domain S-box protein 691 807 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1299 Gso-Chr10 39063744 39069644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1299 62 1187 Histidine Kinase Gene Family AT1G09570 77.562 0.0 1837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1299 K12120 - gmx:547810 2173.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1890 19 47619981 47625028 Gso10g1299 10 39063744 39069644 PCT
Gso10g1299 10 39063744 39069644 Gso19g1890 19 47619981 47625028 PCT