Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1296 ATGGCTTCAACCATAGGTATCTCTTCTTCCATCTCCATATACAAAACCCCCTCTTTTCAACTCTTCAAAAGACCAGCCGCCACAACCACCTCCGTTTTCTTCAACACCCTTCCCCGTAACCGTGACGCCACACTCTCTTCCGTTCCTTCCGCCATTGCCACCCCATCCATTCTCACCGAACAACCCTTAAAGGGCTTAACTTTGGACGACCTTAGTAATAGCGACCAATTTGGCTATGACTTCGAACCCGACACCAACGTTAGCGACCACGAACTCGACATTTCCAAGTTGGGTTTACCTTCGCCCCTCGTCCACTCCCTCCAAAAACGTGGGATCATCAGCCTTTTCCCCATTCAGAGAGCTGTGTTGGTGCCTGCACTAGAAGGTAAAGATATCATTGCTCGTGCAAAGACAGGGACTGGCAAGACTTTAGCATTCGGAATTCCAATTCTTAAAGGTCTCACTAATGATGATGAACAAAGTCCTCACAGGCGGTCTGGGAGGCTTCCTAAAGCGTTGGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTTGAGAAAGAGATACAAGAATCTGCACCTTACCTCAAAACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAGAGTGCCCTTTCACGGGGTGTTGATGTGGTGGTTGGGACGCCGGGTAGAATAATTGACCTGGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTGCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTAGATAAGGTCCCGACTCAGCGCCAGACCATGCTTTTTTCTGCGACCATGCCTGGTTGGGTTAAGAAACTGTCCAGAAAGTATTTGAATAACCCTTTGACGATTGATTTGGTTGGTGAACAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCATTATTAGCCACTGCCACTTCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACTCAGACAAAAAAGGATGCTGATGAAGTATCAATGGCATTAACAAGTAGTATAGCTTCCGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAGTTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGCCGTACTGGGCGTGCAGGAAAAGAGGGTACAGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGGAGCAAATTTGAATTTGTTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTAAATAGAGTTCATCCTGAGTCTGTTGAATTTTTCACTGCAACTGCACAAAAACTGGTTGAAGAACAAGGAGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCATCATGCCGGTCTCTTATCAATCATGAACAGGGATGGACTACATTGCAACTGACTCGAGATTCAGATACTTCTGGAAGATATTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTCAAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAAATAGCTAAAGAGTTGCTCAATAAAGATATGCCATCTGGAAATACTATCTCCAAAATCACCAAGTTACCTCCTTTGCAAGACAATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCCGACAGAGATAGAAGTAACCGTAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAGGACTCTAATGATGAGTTTGGACGAGGTGGTAGAAGTTTCAGATCTGGCAACAACAGGTCTCGAACGGGAAAAAGCAGCGGCAATGATTGGCTAATTGGAGGCAGTAGTAGATCAAGCAGGTTTTCATCATCCAACAGAGATGGGGGCCATGGAGGGGCCTGTTTTAATTGTGGAAAACCTGGCCATCGGGCATCAGATTGTATCACCCAAAAACGAGTCTTTTTCTAG 2208 0.4484 MASTIGISSSISIYKTPSFQLFKRPAATTTSVFFNTLPRNRDATLSSVPSAIATPSILTEQPLKGLTLDDLSNSDQFGYDFEPDTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTNDDEQSPHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAMEEILESSAEQVVATLNRVHPESVEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGRYFSARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNKDMPSGNTISKITKLPPLQDNEPASDFYGKFSDRDRSNRRGSRDQRGFRSSRGWEGGQDSNDEFGRGGRSFRSGNNRSRTGKSSGNDWLIGGSSRSSRFSSSNRDGGHGGACFNCGKPGHRASDCITQKRVFF* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1296 735 CDD GUCT_Hera 529 608 - -
Gso10g1296 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Gso10g1296 735 CDD SF2_C_DEAD 314 443 - -
Gso10g1296 735 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 725 - -
Gso10g1296 735 Gene3D - 318 522 IPR027417 -
Gso10g1296 735 Pfam Zinc knuckle 713 727 IPR001878 GO:0003676|GO:0008270
Gso10g1296 735 SMART helicmild6 354 434 IPR001650 -
Gso10g1296 735 PANTHER - 9 725 - -
Gso10g1296 735 SMART ultradead3 111 317 IPR014001 -
Gso10g1296 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 300 IPR014001 -
Gso10g1296 735 MobiDBLite consensus disorder prediction 673 706 - -
Gso10g1296 735 Pfam DEAD/DEAH box helicase 116 289 IPR011545 GO:0003676|GO:0005524
Gso10g1296 735 Gene3D - 93 304 IPR027417 -
Gso10g1296 735 MobiDBLite consensus disorder prediction 605 707 - -
Gso10g1296 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Gso10g1296 735 Pfam GUCT (NUC152) domain 521 621 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gso10g1296 735 Pfam Helicase conserved C-terminal domain 328 434 IPR001650 -
Gso10g1296 735 SMART c2hcfinal6 713 729 IPR001878 GO:0003676|GO:0008270
Gso10g1296 735 MobiDBLite consensus disorder prediction 629 652 - -
Gso10g1296 735 ProSiteProfiles Zinc finger CCHC-type profile. 714 727 IPR001878 GO:0003676|GO:0008270
Gso10g1296 735 SUPERFAMILY Retrovirus zinc finger-like domains 695 729 IPR036875 GO:0003676|GO:0008270
Gso10g1296 735 CDD DEADc 103 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1296 Gso-Chr10 38998533 39004927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1296 94 456 Eukaryotic Initiation Factors Gene Family AT1G72730 36.785 3.81e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1296 - K16911 gmx:100808574 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1886 19 47580780 47586308 Gso10g1296 10 38998533 39004927 PCT
Gso3g1921 3 44755426 44761147 Gso10g1296 10 38998533 39004927 PCT
Gso10g1296 10 38998533 39004927 Gso19g1886 19 47580780 47586308 PCT
Gso10g1296 10 38998533 39004927 Gso3g1921 3 44755426 44761147 PCT