Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1280 ATGGCTGCTGAGAAGATGCCTGATTCCACCAAACCAGGGATGACTAGAAGCACCTCTTATCTAGACTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAACATCAAGTGTCGTCACACGAATGACTCCCTCGTGCGAAGGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCTTGGACAATTCTCAACCAAATTCTCATCAAAGCAATGACCAAAATTCTGGTAAGTTTGCAAAGGCTGCTAATTCTAGCAGCAAAGGTCTTGATCGTTCCTTAGTGATAAACTCACCTAAAGGATCACCGGGAAGACAAAAGAACCCTTTAAATTCTGATACATCAAACATGGTTCCAAGAAGTGAGGAAACAACACCTCCTGATGAGCAATCTGAAGCTGTTGGTCATGATAGTATTCATGGATCTCGTGGTCAATATTTTAACCAAACCTCAAGCTCAGCAAGACATAGAGCAAAGGGAAAAGCTAATGATACTAAACAAAAATACTGTGATGAAGGCTTGTTGGAATCTTCTTCCCTATGCTCCATTGGAGCCTCAAATAACAGAAACGTGTGTAGCAGGACACATGATGATATCGATGACTCAACGTATTTAAGCAATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTTGGGAAGGCACCGGTGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATGATGTCAATGGGTGCTGGATTTTGTATGCCGTTCATGATGCTACCTAATGCTGCTCATCATATGATGAACACACCCCATTTACATCAGTTAATGGGACTTGGTATGGGGTTCAGGCCAGGCACAGCCATGCCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCATGGTATCACTGACAACAGAGTTCACATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAACCCACCCCTCTTGCAACTAGCACAAACATCAACCTGGCGGAAAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCGTCCCCCAAGAACTTGTTTATTAGTGGACAAGCTGAATATGCAACAAAGCAATAA 1350 0.4304 MAAEKMPDSTKPGMTRSTSYLDSIYGKGSLELVWENGQLHVQQGGSSSTSSVVTRMTPSCEGSFNAKSARLSSLYSLMDFPVQRDSALDNSQPNSHQSNDQNSGKFAKAANSSSKGLDRSLVINSPKGSPGRQKNPLNSDTSNMVPRSEETTPPDEQSEAVGHDSIHGSRGQYFNQTSSSARHRAKGKANDTKQKYCDEGLLESSSLCSIGASNNRNVCSRTHDDIDDSTYLSNNDEEPEDVVKEKPAWEGTGVKRSRNAEVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQMMSMGAGFCMPFMMLPNAAHHMMNTPHLHQLMGLGMGFRPGTAMPCSLPQFPITPLHGITDNRVHMFGFPNQVPPMPISHAPFIPMLGNPSTQPTPLATSTNINLAENPASSQLTTLMASSPKNLFISGQAEYATKQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1280 449 Pfam Helix-loop-helix DNA-binding domain 262 307 IPR011598 GO:0046983
Gso10g1280 449 MobiDBLite consensus disorder prediction 169 183 - -
Gso10g1280 449 MobiDBLite consensus disorder prediction 85 151 - -
Gso10g1280 449 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g1280 449 CDD bHLH_AtPIF_like 258 320 - -
Gso10g1280 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 319 IPR036638 GO:0046983
Gso10g1280 449 MobiDBLite consensus disorder prediction 41 63 - -
Gso10g1280 449 PANTHER TRANSCRIPTION FACTOR PIF3 1 448 IPR044273 GO:0003700|GO:0006355
Gso10g1280 449 Gene3D - 254 316 IPR036638 GO:0046983
Gso10g1280 449 SMART finulus 264 313 IPR011598 GO:0046983
Gso10g1280 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Gso10g1280 449 MobiDBLite consensus disorder prediction 85 192 - -
Gso10g1280 449 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1280 Gso-Chr10 38788099 38790599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1280 140 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.840 1.42e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1280 HLH 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1280 K12126 - gmx:100818543 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0062 2 738533 740613 Gso10g1280 10 38788099 38790599 GST
Gso19g1870 19 47397076 47399930 Gso10g1280 10 38788099 38790599 PCT
Gso3g1906 3 44604209 44607156 Gso10g1280 10 38788099 38790599 PCT
Gso10g1280 10 38788099 38790599 Gso19g1870 19 47397076 47399930 PCT
Gso10g1280 10 38788099 38790599 Gso3g1906 3 44604209 44607156 PCT