Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1277 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCCTCTATCTCCAGCTGCAGAAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACATAGTCAAGACCACCTTCGCACAGATCTTAGGCTTGGACTAAGCCTTTCCGCTACTCAACATGTTGGCTCTTCTAGTTCAGGGGGACACTGGCAACCGATGCAGCCACATCTAATAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGTTATCACGAGTTAGTAAAGACTCTTGAACAGATGTTTGACACTACCATTCTGTGGGGGACTGAAATGGATGGAGTGCAACCAGAGAGATGTCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTGGAGGCATTCGGGTGA 534 0.4532 MGKASSSSSSSISSCRNPSNSTASSLTHQHSQDHLRTDLRLGLSLSATQHVGSSSSGGHWQPMQPHLISSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVEAFG* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1277 177 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gso10g1277 177 Gene3D - 79 176 - -
Gso10g1277 177 PANTHER AUXIN-INDUCED PROTEIN 2 177 - -
Gso10g1277 177 MobiDBLite consensus disorder prediction 1 30 - -
Gso10g1277 177 SUPERFAMILY CAD & PB1 domains 81 171 - -
Gso10g1277 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 177 IPR003311 GO:0005634|GO:0006355
Gso10g1277 177 MobiDBLite consensus disorder prediction 1 31 - -
Gso10g1277 177 Pfam AUX/IAA family 76 172 IPR033389 -
Gso10g1277 177 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1277 Gso-Chr10 38754481 38756104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1277 89 170 B3 DNA Binding Superfamily AT4G23980 40.244 3.75e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso10g1277 AUX_IAA 1.9e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1277 K14484 - gmx:100781660 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0064 2 756980 758306 Gso10g1277 10 38754481 38756104 GST
Gso19g1869 19 47383583 47384809 Gso10g1277 10 38754481 38756104 PCT
Gso3g1905 3 44592764 44594072 Gso10g1277 10 38754481 38756104 PCT
Gso10g1277 10 38754481 38756104 Gso19g1869 19 47383583 47384809 PCT
Gso10g1277 10 38754481 38756104 Gso3g1905 3 44592764 44594072 PCT