Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1276 ATGGAAAACCACCACCAAATGCAACAACCAAACCGTGAATTTACCATACTAAGATCCACCGATTTCCTCCGCCAGAATCTCAATTTATATCCCACAACCGTCAACACCGGAGAACATGCCGATCCTTCCATCAAAGAAGTGGATTTTTTCTCATCAAGATCACCAACAAAGAATAGTGACACTGATAACTCGAGTCCAGAAGAACCACATGATCATCGTCATACGAACATGGCTAAGGACGATGGATCACCAACTCTTTTCAATGATCAGCTCGTAAACACTGCGCTGAATCTAAGTCCGAGTGCTGGGTTATCAAGATCAGCAGCAAATGATGAAAATATTGAAACTTTGCTGACTACACTTCAAAGGGAATCACTAAGACTAAAAGAAGAGAATTGCAAACTGAGAACTATGTTGGACCAAATCACCAAAAACTACAACCAGTTACAATTGTTCATTGCTTTGCAGAAGCAGAAGCAGTGTCAGATGGAGACAAATTTAAATGGGATGATGTTTGGTCAACATTTATTGGACCCACGAGGACCATTCACCAAATTAGATGCTCAAGTTGCACCATTTCCAGATGATAAATCTGGTCAACGGGGTCTTCCTGAAACTGATCCTGTAGAAGATGTTCCTGAACAATCAACCTCACAGAGTTGGGGCTCATCCAAGAGTCCCAAGTTTGAAGAGTCCAACTCTAGTGAGCTTCCTTTAAAAAAAACCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTCTGATTAGCGATGGATGTCAATGGAGGAAATATGGACAAAAAATAGCCAAGGGAAATCCTTGTCCCCGTGCCTATTATCGTTGCACTATGGCCGTAGGATGCCCGGTTCGTAAGCAGGTGCAAAGATGCATGGATGACAAGACGGTGTTGATAACAACCTACGAAGGCAATCATAACCATCCTCTTCCACCCTCAGCCATAGTCATGGCAAATTCTACCTCAGCAGCTGCATCTATGTTCTTATCTTCTTCATGTTCAACATCTAATAATAACGAAGCACTAAGTAACACTGTAGGAGTATTCTCTTCCATGCCCTACATCCCAATGGCAACGCTCTCAACCTCTGCACCATTTCCCACTATCACCCTTGACATGACCACCAACCCCTCTGCCCTAACATCCCCTCTTCCATTGCATGCAACTACTTTTCCTCAGCTACTAGGACACCCTGTCATCTTCCCCCACAAGATGCCACATCCATTATTAGGCCAACAACAACCTTTGTTTACGACAGAGACGATGAGTGCAGCTATTGCTTCCAATCCGAATTTCACTATAGCATTGGCAGCAGCGATCTCATCAATTATTGGAGCTCCTAGAGGAAATGATGGAATTAACAACAATAGTAGCAATGGTGGAAGTGATCTTCCTCTTAATGGGACATCTATGTTGCCTGGATCCACTTAG 1446 0.4357 MENHHQMQQPNREFTILRSTDFLRQNLNLYPTTVNTGEHADPSIKEVDFFSSRSPTKNSDTDNSSPEEPHDHRHTNMAKDDGSPTLFNDQLVNTALNLSPSAGLSRSAANDENIETLLTTLQRESLRLKEENCKLRTMLDQITKNYNQLQLFIALQKQKQCQMETNLNGMMFGQHLLDPRGPFTKLDAQVAPFPDDKSGQRGLPETDPVEDVPEQSTSQSWGSSKSPKFEESNSSELPLKKTRVSVRARSEAPLISDGCQWRKYGQKIAKGNPCPRAYYRCTMAVGCPVRKQVQRCMDDKTVLITTYEGNHNHPLPPSAIVMANSTSAAASMFLSSSCSTSNNNEALSNTVGVFSSMPYIPMATLSTSAPFPTITLDMTTNPSALTSPLPLHATTFPQLLGHPVIFPHKMPHPLLGQQQPLFTTETMSAAIASNPNFTIALAAAISSIIGAPRGNDGINNNSSNGGSDLPLNGTSMLPGST* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1276 481 Gene3D WRKY domain 240 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso10g1276 481 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 480 IPR044810 GO:0003700
Gso10g1276 481 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso10g1276 481 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 39 480 - -
Gso10g1276 481 MobiDBLite consensus disorder prediction 211 233 - -
Gso10g1276 481 MobiDBLite consensus disorder prediction 33 84 - -
Gso10g1276 481 MobiDBLite consensus disorder prediction 63 79 - -
Gso10g1276 481 MobiDBLite consensus disorder prediction 459 481 - -
Gso10g1276 481 MobiDBLite consensus disorder prediction 183 244 - -
Gso10g1276 481 Pfam WRKY DNA -binding domain 257 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso10g1276 481 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso10g1276 481 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1276 Gso-Chr10 38732731 38737770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1276 121 449 WRKY Transcription Factor Family AT4G04450 43.003 5.86e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso10g1276 WRKY 5.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1276 - - gmx:100780044 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0066 2 772153 776661 Gso10g1276 10 38732731 38737770 GST
Gso19g1867 19 47352136 47356956 Gso10g1276 10 38732731 38737770 PCT
Gso3g1904 3 44571104 44575457 Gso10g1276 10 38732731 38737770 PCT
Gso10g1276 10 38732731 38737770 Gso19g1867 19 47352136 47356956 PCT
Gso10g1276 10 38732731 38737770 Gso3g1904 3 44571104 44575457 PCT