Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1268 ATGAAAGGTAAAGTACTAGGATCCACTGTTTCTCTTATCCTAGTGGTGGGTGTCGTAATTGGCGTGGTTGCTGTAGTTCAAAGTCCAAAGGGCGTCAACAACAGCAATGGAGGAGAAGTGAAAAGCACCAACAGGGCAGTGACAGCGTTGTGCCAAGGCTCAGACGACAAGAAACTGTGCCACGATGTTCTGTCCTCTTCAAACAGCACAGACCCAAAGGAATACATCGCAACCGTGGTGAGAAGCTCGATGGACAGTGTTATCAAAGCATTGAATATGAGCGACAGGCTGACGGTGGAACACGGCAACAGCAGCGCCGGAATGAAGATGGCTCTGGAGGATTGCAAGGACTTGTTGCAGTCCGCAATGCACGACCTGGAGGCCTCAGGCGTCTTGGTTAAAGAGAGCAGCCTCCAGGACGTGCACCAGCGGACCGCCGAGCTCAAGAACTGGTTGGGAGCTGTTGTTGCCTACCAGCAATCTTGCCTCGACGGCTTCGACACCGACGGCGAGAAGAAGGTTCAGGAGCAGCTACAATCTGGTAGCCTTGACAACGTTGGAAAGCTCACAGGCTTGGCACTCGATGTCGTGTCAGGGATTACACACATTCTCCAGTCCTTGGACTTGGACCTTGCTCTCAAGCCCGCCTCTCGTCGCCTTCTTGACGTTGATGATGATGGCTTCCCCACTTGGGTCTCCTCTGCTGATCGCAAGCTCTTGGCCAACGATCCTGTTTTGCCCCATGCTACTGTTGCTAAGGATGGTAGTGGTCAATTTCATACTGTTTTGGACGCTATTAACTCCTACCCCAAGCATCACCAGGGTAGATATGTTATCTACGTTAAGGCTGGTATCTATGATGAGTACATCACCGTTGACAAGAAGAAGCCCAATCTTCTCATCTACGGTGATGGCCCCTCAAAGACCATCATCACTGGCCGCAAGAACTTTCACGAGGGTACCAAGACAATGAGAACCGCCACCTTCTCTACTGTTGCTGAAGATTTCATGGCCAAGTCAATTGCATTCGAGAACACCGCTGGTGCAGAAGGACACCAAGCAGTGGCACTCCGCGTGCAAGGTGATCGTTCAGTGTTCTTTGATTGCGCTATGCGTGGTTACCAAGACACATTGTATGCCCACGCCCATCGTCAGTTCTACCGCAACTGCGAAATCTCTGGAACAATTGACTTCATCTTCGGCTACTCCACCACCTTGATCCAGAACTCAAAGATCTTGGTGAGGAAACCCATGCCAAATCAACAGAATATAGTGGTGGCTGATGGCACAGGCCAGAAGAACATGCCCACTGGAGTAGTCCTCCAAAACTGCGAGATCATGCCTGACGCTTCCCTCTTCGCTGACCGCATGATCGTGAAGACTTACTTGGCCAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATCGAGAATGTTATGGGCGACTTGATTCAGCCCGAGGGTTATATTCCATGGAACCCAATTGAGCCAAACACACAGGATTGTTACTTCGCCGAGTTTGGCAACACTGGACCAGGTTCCGTTACTCAAGCAAGAGCTAAGTTTGCCAAAGGTCTCATCAGCAAGCAAGAGGCTGCAAAATTCACTGCTGAGCCTTGGCTCACAACTAGCACTTGGTTGCCTTCCGCTGCCGTTCCCTTCGATCCTAGCTTCACCAAAGCTTAA 1686 0.5095 MKGKVLGSTVSLILVVGVVIGVVAVVQSPKGVNNSNGGEVKSTNRAVTALCQGSDDKKLCHDVLSSSNSTDPKEYIATVVRSSMDSVIKALNMSDRLTVEHGNSSAGMKMALEDCKDLLQSAMHDLEASGVLVKESSLQDVHQRTAELKNWLGAVVAYQQSCLDGFDTDGEKKVQEQLQSGSLDNVGKLTGLALDVVSGITHILQSLDLDLALKPASRRLLDVDDDGFPTWVSSADRKLLANDPVLPHATVAKDGSGQFHTVLDAINSYPKHHQGRYVIYVKAGIYDEYITVDKKKPNLLIYGDGPSKTIITGRKNFHEGTKTMRTATFSTVAEDFMAKSIAFENTAGAEGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYSTTLIQNSKILVRKPMPNQQNIVVADGTGQKNMPTGVVLQNCEIMPDASLFADRMIVKTYLARPWKAFSRAVFIENVMGDLIQPEGYIPWNPIEPNTQDCYFAEFGNTGPGSVTQARAKFAKGLISKQEAAKFTAEPWLTTSTWLPSAAVPFDPSFTKA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1268 561 Gene3D - 244 558 IPR012334 -
Gso10g1268 561 Pfam Pectinesterase 249 542 IPR000070 GO:0030599|GO:0042545
Gso10g1268 561 SUPERFAMILY Pectin lyase-like 248 555 IPR011050 -
Gso10g1268 561 Pfam Plant invertase/pectin methylesterase inhibitor 46 195 IPR006501 GO:0004857
Gso10g1268 561 PANTHER PECTINESTERASE 4 558 - -
Gso10g1268 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 198 IPR035513 -
Gso10g1268 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Gso10g1268 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 201 IPR035513 -
Gso10g1268 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 194 IPR006501 GO:0004857
Gso10g1268 561 CDD PMEI-like_3 49 201 - -
Gso10g1268 561 PANTHER PECTINESTERASE 4 558 - -
Gso10g1268 561 SMART PMEI_2 42 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1268 Gso-Chr10 38527050 38529298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1268 1 553 Carbohydrate Esterase AT2G47030 39.900 6.74e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1268 K01051 - gmx:100775225 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1268 10 38527050 38529298 Gso3g1895 3 44481882 44483936 PCT