Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1267 ATGGAAAAAAAAGCAACACTCGTCTCTGCTGTTTCTCTTATTCTCGTAGTGGGCGTTGCCCTAGGCGTTGTTGCTTATGTCTCCACCAACAACAGCGGAAGCGACAACAGTGAAAGCAACGACAGCGGTCAAGTTTCGACCCATACTAAAGCCGTGCAAGCCGTGTGCCAAAACTCCGACGACAAGAAGTTTTGCTCCGACACTTTAAGCTCCGTCAACACCTCGGACCCAACGGCTTACGTTAAAACCGTTTTGAAAAAAACGATGGACGGCGTCATCAAAGCCTTCAACCTCAGCGACACACTCACCGTCGAACACAGCAAGACCAACTCCTCCGTCAAGATGGCCCTGGAGGACTGCAAGGACTTGTTAGACTTCGCCATCGACGAATTGCAAGCCTCGCAAGTCCTAGTCAAAGACAACAACGTCAACAACATCAACGACGGCGTCTCCGACCTCAAAAACTGGATTGGCGCCGTTGTCGCGTACCAGCAATCGTGCCTTGACGGGTTCGACACCGACGCCGAGAAGGAGGTGCAGTCCAAGCTCCAAACCGGGGGCTTGGACTCTATGGGGAAGCTAACCGCGTTAGCGCTGGACGTTATTTCCAGCTTCGCAGAATTATTATCCGGTTTCAACTTGAACTTGACGACGTCGGTAAAACCACCGACGTCGTCATCTCGTCGTCTTCTTGACGTGGATCAGGATGGATATCCATCTTGGATATCCATGCCTGATCGCAAGCTCTTGGCGGATGCCAAGAAAGGCGATTCGGTTCCTCCCAATGCCGTTGTTGCCAAGGATGGGAGTGGCCAATATAAGACTGTTTTGGATGCTATTAACTCCTATCCCAAGAATCACAAAGGCAGGTATGTTATTTACGTCAAGGCTGGTGTCTACGACGAGTACATCACCGTTGACAAGAAGAAGCCCAATATTTTAATTTACGGTGATGGCCCCACCAAGACCATTATCACAGGTAGTAAAAACATGAAGGATGGCGTGAAGACAATGAGAACTGCTACCTTCGCGACGGTTGCAGAAGATTTCATAGCAAAGTCAATGGCATTTGAGAACACTGCTGGTGCAAGAGGGCACCAAGCAGTGGCGCTTCGCGTGCAAGGTGACCGTTCGGCCTTCTTCGACTGTGCCATACATGGTTACCAGGACACACTATACGCCCACGCTCATCGTCAGTTCTACCGTAACTGCGAAATCTCCGGCACAGTGGACTTCATTTTCGGCTACGGGACAACCTTGATCCAAAGCTCCAAACTCATAGTGAGGAAGCCTGACCCGAATCAACAGAACATAGTGGTGGCCGATGGCACGGACCAGAAGAACATGCCGACAGGAGTGGTGCTTCAGAACTGCGAGATCATACCGGAGGCGGCGCTGGTCCCCGACAAGATGAAGTTCAGATCATACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCCATCTTGATGGAGAACACCATTGGTGATTTTATTCAGCCAGATGGGTTTCTTCCATGGAATGGCAACCTGTATCTTGACACGTGTTTCTTTGCCGAGTATGCCAACACCGGCATGGGTGCCGATACTCAACGTAGGGTTAAGTGGAGTCGTGGAGTCCTTAACAAGGCCGATGCCACCAAATACACTGCTGACCAATGGCTCCAAGCCAACACGTGGTTACCCGCCACCGGCATTCCTTTCGATCTTGGCCTCACTAAAGCTTGA 1725 0.509 MEKKATLVSAVSLILVVGVALGVVAYVSTNNSGSDNSESNDSGQVSTHTKAVQAVCQNSDDKKFCSDTLSSVNTSDPTAYVKTVLKKTMDGVIKAFNLSDTLTVEHSKTNSSVKMALEDCKDLLDFAIDELQASQVLVKDNNVNNINDGVSDLKNWIGAVVAYQQSCLDGFDTDAEKEVQSKLQTGGLDSMGKLTALALDVISSFAELLSGFNLNLTTSVKPPTSSSRRLLDVDQDGYPSWISMPDRKLLADAKKGDSVPPNAVVAKDGSGQYKTVLDAINSYPKNHKGRYVIYVKAGVYDEYITVDKKKPNILIYGDGPTKTIITGSKNMKDGVKTMRTATFATVAEDFIAKSMAFENTAGARGHQAVALRVQGDRSAFFDCAIHGYQDTLYAHAHRQFYRNCEISGTVDFIFGYGTTLIQSSKLIVRKPDPNQQNIVVADGTDQKNMPTGVVLQNCEIIPEAALVPDKMKFRSYLARPWKAYSRAILMENTIGDFIQPDGFLPWNGNLYLDTCFFAEYANTGMGADTQRRVKWSRGVLNKADATKYTADQWLQANTWLPATGIPFDLGLTKA* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1267 574 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Gso10g1267 574 CDD PMEI-like_3 54 206 - -
Gso10g1267 574 Gene3D - 256 571 IPR012334 -
Gso10g1267 574 PANTHER PECTINESTERASE 3 572 - -
Gso10g1267 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 183 IPR006501 GO:0004857
Gso10g1267 574 PANTHER PECTINESTERASE 3 572 - -
Gso10g1267 574 SUPERFAMILY Pectin lyase-like 260 570 IPR011050 -
Gso10g1267 574 SMART PMEI_2 47 201 IPR006501 GO:0004857
Gso10g1267 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Gso10g1267 574 Pfam Pectinesterase 262 556 IPR000070 GO:0030599|GO:0042545
Gso10g1267 574 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Gso10g1267 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1267 Gso-Chr10 38520507 38523576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1267 2 571 Carbohydrate Esterase AT3G05610 40.418 7.15e-147 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1267 K01051 - gmx:100820142 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0073 2 836645 838987 Gso10g1267 10 38520507 38523576 GST
Gso3g1895 3 44481882 44483936 Gso10g1267 10 38520507 38523576 PCT
Gso10g1267 10 38520507 38523576 Gso19g1858 19 47272926 47275109 PCT