Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso10g1266 | ATGGCCACAGGGATTGTGATCCAGAACTGCGACATAGTCCCGGAGGAGGCTCTGTACCGTGCTAGGTTTAAAGTGAAATCGTACTTGGGGAGGCTGTGGAAGCGTTACTCAAGAACAGTCGTTATGGAATCGAACATTGGTGACTTTATTCGGCCAGAAGGGTGGAGTGCTTGGGATGGGAACCAGAATCTTGGCACGTTGTACTATGCTGAGTACGCTAATGTTGGAGCAGGTGCTAACTTTACAGAAAGAGTTAATTGGAAGGGTTACCATTGTAATATTAGTGTGGATGAAGCTGCGAAATTCACTGCTGAGCAATTTCTTAGAGCTGGACCTACTGGAAGAGCTGATTGGTTAAAAGCTACGGGCATTCCTTTATTCCCTAGTTTCATCAGCACCAGACCTTGA | 408 | 0.4632 | MATGIVIQNCDIVPEEALYRARFKVKSYLGRLWKRYSRTVVMESNIGDFIRPEGWSAWDGNQNLGTLYYAEYANVGAGANFTERVNWKGYHCNISVDEAAKFTAEQFLRAGPTGRADWLKATGIPLFPSFISTRP* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso10g1266 | 135 | SUPERFAMILY | Pectin lyase-like | 3 | 125 | IPR011050 | - | |
| Gso10g1266 | 135 | Pfam | Pectinesterase | 2 | 109 | IPR000070 | GO:0030599|GO:0042545 | |
| Gso10g1266 | 135 | PANTHER | PECTINESTERASE | 1 | 125 | - | - | |
| Gso10g1266 | 135 | PANTHER | PECTINESTERASE | 1 | 125 | - | - | |
| Gso10g1266 | 135 | Gene3D | - | 1 | 129 | IPR012334 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso10g1266 | Gso-Chr10 | 38517972 | 38518379 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso10g1266 | 3 | 132 | Carbohydrate Esterase | AT1G02810 | 49.231 | 7.29e-34 | 122 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso10g1266 | K01051 | - | gmx:102670104 | 285.419 |