Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1246 ATGGCTGCCACTGCTGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATAATAGACCCTCTCATAACAACAGTGCCCTCAAACCGTGGCATGTTTGGGTCACACTTGGTGGAACCTTTGTCCATTAATTCGCACAAGTTGTGGGGACCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTTGTGGATGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGCGGTGGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAGCTTGCAGGGTTAATTCAGGATTATGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCGGTTATAGAGAATCTTGATGGAAAAGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCAAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACACAAGCAGAGATGGAAGCTGCTGTTGCAGCCTTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA 849 0.4405 MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFGSHLVEPLSINSHKLWGPRISAAVAQEEAVVVVDDDGAGLVEEEKVEENEGEAVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVSLAQGKRA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1246 282 PANTHER TRANSFORMER-2-RELATED 86 281 - -
Gso10g1246 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Gso10g1246 282 SUPERFAMILY RNA-binding domain, RBD 103 192 IPR035979 GO:0003676
Gso10g1246 282 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 86 281 - -
Gso10g1246 282 SUPERFAMILY RNA-binding domain, RBD 194 281 IPR035979 GO:0003676
Gso10g1246 282 SMART rrm1_1 202 275 IPR000504 GO:0003723
Gso10g1246 282 SMART rrm1_1 111 184 IPR000504 GO:0003723
Gso10g1246 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Gso10g1246 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Gso10g1246 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Gso10g1246 282 Gene3D - 192 282 IPR012677 -
Gso10g1246 282 Gene3D - 69 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1246 Gso-Chr10 37444167 37453408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1246 83 280 Eukaryotic Initiation Factors Gene Family AT3G16380 31.651 6.45e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1246 - - gmx:100801829 516.153