Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1233 ATGTATTGGGGGGAAGTTATGGCTGGCCATGTGGGTAGAGGTGTCTTAGAGGAGGAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTTGTTGAGTATGTTAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCAGCAGAGAAGGCTAGAAATAGACTCATGAGGAAGCAGCAATTTCACCAGCAACAACAACAACAAGAACAGTTGCAGCAGCAGCATCAGGCACAACAACAACAAATGCAATTCAACTTTGACATGAAAGGCATCATGGCCATGCTTGAGGACAACATCCATAGAACACCTTATATATCTCAATCAAGACAAGAAATGATCAACATGCACCAAAACACCACAGAAGAGCAAGGATACTTGTACTCTATGCTCAATGACAACTCTTCTGCTTCTTCTGCACCAGAGACCTCTGCAGAAGAAGTTTTGTGGGATGGTCTGTGGAACATAGATGATGTTCATGGCAATTTCAGTGTAGCTAGTGCAGCAAGCAAAGTTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 798 0.4398 MYWGEVMAGHVGRGVLEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLMRKQQFHQQQQQQEQLQQQHQAQQQQMQFNFDMKGIMAMLEDNIHRTPYISQSRQEMINMHQNTTEEQGYLYSMLNDNSSASSAPETSAEEVLWDGLWNIDDVHGNFSVASAASKVGLYNLVAPFC* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1233 265 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Gso10g1233 265 MobiDBLite consensus disorder prediction 142 164 - -
Gso10g1233 265 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Gso10g1233 265 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso10g1233 265 MobiDBLite consensus disorder prediction 122 164 - -
Gso10g1233 265 Gene3D - 23 75 - -
Gso10g1233 265 SMART sant 75 123 IPR001005 -
Gso10g1233 265 SMART sant 22 72 IPR001005 -
Gso10g1233 265 MobiDBLite consensus disorder prediction 122 140 - -
Gso10g1233 265 CDD SANT 80 121 IPR001005 -
Gso10g1233 265 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Gso10g1233 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Gso10g1233 265 PANTHER MYB TRANSCRIPTION FACTOR 3 256 - -
Gso10g1233 265 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gso10g1233 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gso10g1233 265 Gene3D - 80 124 - -
Gso10g1233 265 Coils Coil 145 165 - -
Gso10g1233 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 256 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso10g1233 265 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1233 Gso-Chr10 37110883 37112632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1233 16 265 MYB Transcription Factor Family AT4G13480 54.212 1.24e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1233 Myb_DNA-binding 9.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1233 K09422 - gmx:100795981 496.123