Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1177 ATGTGCAAACATGACTTCTTAAGCTTGTCTAGGATGGAAACCATTGGTTCTGTGGATGACCTCTTGGATTTTTCATCAGACATAGGCGAGGAAGATGATTACGATGACAAACCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGCGCCGGCCCATCATTGTTTAACCCATTGGTCCAGGTTGATCCAAACCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACGTTTGTCGACCTATCATCTATTCAACCCGGCACAATCAAGAACCAAAAATCAGCCCCAGTACTTGAGTGTAGCACAGGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTGTGATCACCTGAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCATCGCCCTGGCCTTGCTGAGAATTCTAGTCAGCAAGTCTGGTGGAGACAGCCAAGTAATGGAACTTCCAAAGCAGATGAAGGGATGAAAATCTCATCCATCGGTAGAAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCTCTGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTCAAGTCTGGGCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTCATAGTGATTTGCATTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGATAA 771 0.4591 MCKHDFLSLSRMETIGSVDDLLDFSSDIGEEDDYDDKPRKACPSLNSKCAGPSLFNPLVQVDPNHSFSEFAEEELEWLSNKDAFPSVETFVDLSSIQPGTIKNQKSAPVLECSTGSSNSNNSTNSISLLNSCDHLKVPVRARSKSRSRHRPGLAENSSQQVWWRQPSNGTSKADEGMKISSIGRKCQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRRQKQMGMG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1177 256 PANTHER GATA TRANSCRIPTION FACTOR 1 17 252 - -
Gso10g1177 256 Pfam GATA zinc finger 186 219 IPR000679 GO:0006355|GO:0043565
Gso10g1177 256 ProSiteProfiles GATA-type zinc finger domain profile. 180 216 IPR000679 GO:0006355|GO:0043565
Gso10g1177 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 243 - -
Gso10g1177 256 SMART GATA_3 180 230 IPR000679 GO:0006355|GO:0043565
Gso10g1177 256 MobiDBLite consensus disorder prediction 140 175 - -
Gso10g1177 256 PANTHER GATA TRANSCRIPTION FACTOR 17 252 - -
Gso10g1177 256 ProSitePatterns GATA-type zinc finger domain. 186 211 IPR000679 GO:0006355|GO:0043565
Gso10g1177 256 MobiDBLite consensus disorder prediction 152 175 - -
Gso10g1177 256 CDD ZnF_GATA 185 232 IPR000679 GO:0006355|GO:0043565
Gso10g1177 256 Gene3D - 181 253 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1177 Gso-Chr10 35525811 35529407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1177 63 256 C2C2-Gata Transcription Factor Family AT3G24050 45.259 1.33e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso10g1177 GATA 4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1177 - - gmx:100784527 493.426