Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1171 ATGGCCAACCATTCTTCTTTGCCATCTTTACTTTGCGCTTCTTTCAACCAAGACCATAGTTACTTTGTCGTTGGCACCAAAGATGGTGTTAGAATATTTGATACCAATACAGGAAGACTTTGTTATCAAAAGATAAAATTCACTTTTGTTATTGCTGAGATGTTGTTTAGCTCCAGTCTTCTTGCTATCATCAGAGCCGGTGATCAACCATCTTTGTCCCCTTGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTATTAGAGAATTGAATTTTTTAACTTCCATACTTGATGTTTGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATGCATATGAAATAAATAGTCTCATAATCTTGGATACTATTGACACAATGCCAAATATTAAAGCCTTTGAAACACACAACCTTATAAAGGAGCTTAATGTAAAGGCCTTGCAACATATAAGACAAATAGCACAAGAATCAAGTGGAGAAATTGAGTATGGTGGTGGACGCCAGCCTGTTGTTTTAATAACATTTAGCCAAAGACTTTGCAGGGGCTTTAATGATGTTGTGAATGGGTATGTTGATGATGGCTGGTCACTGATGGAGTGGAAGATTTGA 624 0.3686 MANHSSLPSLLCASFNQDHSYFVVGTKDGVRIFDTNTGRLCYQKIKFTFVIAEMLFSSSLLAIIRAGDQPSLSPCRLCLFNTTTGAAIRELNFLTSILDVCMNRQRLIVILQDKAYAYEINSLIILDTIDTMPNIKAFETHNLIKELNVKALQHIRQIAQESSGEIEYGGGRQPVVLITFSQRLCRGFNDVVNGYVDDGWSLMEWKI* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1171 207 PANTHER AUTOPHAGY-RELATED 18A, ISOFORM E 1 137 - -
Gso10g1171 207 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 1 137 - -
Gso10g1171 207 SUPERFAMILY WD40 repeat-like 10 130 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1171 Gso-Chr10 35179984 35183198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1171 123 203 Homeobox Transcription Factor Family AT2G34710 57.955 1.27e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1171 K17908 - gmx:100803048 416.001