Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1160 ATGGCGGTTTCTTCTTCTGCAACAAAATGGGTCCTCTTCTTGCTTCTGGCGCTGCTCATTCGAGAAGAAGCCATGGCCATGGCTACTACCCCACAGATCTCTGACCTCAGGAATGTTGAAGTTGAAAGACACAGGTTGCCGAGCTTGACGAACTCGTCAATGGTGGAGAGGGCAAAAGAGGCTGACAAATTAAATGAACAAGCTGCTGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAACAGCACAGAGAGAAGGAAGCTGGGATATTTCTCTTGTGGAACAGGCAACCCAATTGATGATTGTTGGCGTTGTGACCCCAACTGGCAACGCAACCGGAAGCGTCTGGCGGATTGTGGCATTGGTTTTGGCCGGAATGCTATCGGTGGTCGTGATGGAAAATTTTATGTGGTGACTGACCCCAGGGATGATGACCCTGTGAACCCGAAACCTGGCACTCTTCGCCATGCTGTGATCCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGCTGAAGCAGGAGCTGATCATGAACAGCTTTAAGACCATTGATGCTAGAGGAGTGAATGTGCACATTGCTAATGGAGCATGCATCACAATTCAGTTTGTAACCAATGTTATCATTCATGGCTTGCACATTCATGATTGCAAACCTACTGGAAATGCTATGGTGAGAAGCTCCCCAACACATTTTGGTTGGAGGACAATGGCTGATGGAGATGCTATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCACACTGTGCGGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATTACTATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTACTAGGCCACAGTGACTCTTACACAAGAGACAAGCTGATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGTTGTAGACATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACAGATACAATGCTCCTACTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAACCCAATGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTACTGAATGGGGCCTATTTCACTCCATCTGGTGCTGGAGCCTCAGCCAGCTATGCTAGAGCCTCTAGCTTAGGAGCAAAATCTTCTTCCATGGTTGATTCCATGACTTCCAATGCTGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAG 1353 0.4834 MAVSSSATKWVLFLLLALLIREEAMAMATTPQISDLRNVEVERHRLPSLTNSSMVERAKEADKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNPFAKEVTKRVETAETQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVDSMTSNAGALGCKRGRQC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1160 450 PANTHER PECTATE LYASE 18-RELATED 15 447 IPR045032 GO:0030570
Gso10g1160 450 SUPERFAMILY Pectin lyase-like 76 444 IPR011050 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Gso10g1160 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Gso10g1160 450 SMART amb_all 176 373 IPR002022 -
Gso10g1160 450 Gene3D - 101 443 IPR012334 -
Gso10g1160 450 Pfam Pectate lyase 188 365 IPR002022 -
Gso10g1160 450 PANTHER PECTATE LYASE 15 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1160 Gso-Chr10 34419629 34425041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1160 32 450 Polysaccharide Lyase AT4G13710 79.953 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1160 K01728 - gmx:100781845 908.286