Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1145 ATGGATGATATGGACATGGACATTCCACTCCCTGAAGAACTCGAATTTCTCGAATCAAATTCTCACTTTGCCGAACAACAAGAAGAAGAAGACCGTCACTATTACTTCCCAGACCTAGACCCCACCGCCGAAATTCATGAATCAAATTCTCAACAATCGCCGCCACCGCCAGATCTCGCTGCTCCTTCGGCGGAGCCCGAATCCAGCGGCCACAAGCGATCGTGTCCGCCTTCTCCTTCTCCTCCCGAAGAGGAGAAGAGAGCGAAAGTTAGGGTTGCAGTTGAGGAGGATTCCTCCGCCGCGGCCGCCGACGAGGACTGGCTCCGGTACTCTCCTCCGCCGGTTCCGGAGGGGGAGCCGGCGGTGGAGGAAATGGCGTTCGAGAAGGAGAAGACGCTGTCGAGGTACGCCTCGGAGATCGACGGCGAGTGCATGCCGATCACCGCGCCCAGCGGCAACAGGGTGTACGCGAAGCTTAACCGGTTTCAAGGAGAGGAGCGCGTCACGAAGCTTGATTACAATGGATATTCTACTGAACTTAGTTCAGAACCAGTTAATGTTATACTTGAGAGGTTGGAGCAAGAGGCTTTTGCTAAGGCCTTGGAAGCTAGTTCTGAAGGCCAAAGTGTTCTAGACGTTCCTGAAGCGCAAATGGTTCATGAGCGACTTTGGGTTGATAAATATGCTCCAAAATCATTTACTGAGCTTCTAAGTGATGAACAGACAAATCGCGAGGTACTCTTGTGGTTGAAACAATGGGATTCTATTGTGTTTGGATCTGAAATTCGAAGCACATCAGATGACGTTTTGTCTGCTTTGAAACGACATTCTTCCATTGTCCACAATCAGAAACCATTGAATTCAAAGTTTCCAAGGATGAGCAGAGGACCCAGATGGAGTAATGGGAGGAGGTATAAAAATTCTAGAAGTATGGATGAAAGTGGTAGTTCAAAGAGTATTCAAGATATATGGAATGCAAAGTCAAGGAATATTGGTCCTCCAGAACCAAAGATCCTTCTGCTCTGTGGACCACCAGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCAATGTGGATATCATGTGGTGGAGGTCAATGCTAGTGATGATCGTTCGACAGCAACAATTGAAGCCAAAATCCTTGATGTGGTCCAGATGAACTCTGTCTTGTCTGATTCAAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTTCTGAAAGGAAGCCTGATGCAGGGAAACAAAGTTTGGGCAAAGGACAACAGGAAAGGAAGTCATCAAAAAAGGGTTCAAAAACAGCTTCACTTTCAAGACCTGTGATCTGCATTTGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAACGGTTAGTCGTGTGGTAAACAGGCTGACATATATATGTAACAAGGAGGGAATGAAAGCCAGTGCAATTGCACTCACTGCTCTAGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACTCTCTCCAATTTCTCTTCAAGAAGAAACAGGCACTCAATGTGTTTGATATTGGTTCTCAAGTTGTTGGCCAGAAGGACATGTCAAAGAATGTTCTAGACATCTGGAAAGAAATATTCCATAAGAGACGAACAAAAAAGATTGAAAGAAAATCTCATAGAGGCAAGTCCTTTGAATTTGACTCCTTGTACTCCCTTGTGTCAAACCGTGGTGATAGTAACTTGATTCTGGATGGGATTCATGAAAATGTTTTGCGGCTCAATTATCATGACCCAGTGATGCAGAAAACTGTTGAGTGCTTCAACAATCTGGGAGTTTATGATCTAATGCATCAATATATAATGCATACACAACAGTTGCCCCTTTATGTATATTTGCCCCTAGTAGCAATTACTGTACATCATATTGTATCTCAAGTTCAGAAACCAACCATTGAGTGGCCAAAGTCACATCAGAGATATCGTACAATGATGATGGAAAAGATGGACATTTTGAATACCTGGCACCACAAAATCCCACCGTATATTGCAAGGAACTTATCAGCTAGTTCCTTTGTTGAAGACTTAATTTCTCCATTATTACATATTCTGTCCCCACCAACTATAAGACCGGTAGCATTTCAATTACTATCAGATAAGGAGAAGAATGATCTTGCTCAATTAGTTAGCACAATGGTATCATACACTATAACGTATAAAACTGTGAAATCAGATATGCTGCCTCAAACCCAGAGGTGTGAAGTAGCTGATGGCTTGGCACTGTCTCTTGTTCCTCCTATCAGCGACTTTATAAATTTCAAGGATTATACTTCAAACCATAATGTGCTTTCTGTAGCTATGAAGCAGGTTTTGGTACATGAGGTTGAAAAGCATAAGATTTTACAAGTTAGTAATGACAAAACTGGGGCCTTCACAAATGGAGGGCATGAAGTTATTGAAACTGGAACTAACAACATCCCATTAGCCAATACCAATCATGCAACTGCAGTTGATATGAAAACTAATGAAAATCAGGCTAATGTTTTATCACAGCAATTAAATGCTAATCCCACAGCTGTTTCACCAAACTTGAATTCCGATAAAAGTTCAATTGCAGCAGACTGTGGGAAACTACTAAACATGGGAAATGTGAAAAAACCATCCAGAACTTCCTCAAGTTTCTTTGACAGGTTTAAAAAAGTAAATGTTAAGGGTTTACAAAGTAATGACAGATCTCTACCAGAAGAAGCTACCTTGGACAAAGATCGATACCCTATACTTTTTAAATATAACGAGGGCTTTACTAATGCAGTAAAAAGGCCTGTTCGTATGCGTGAATTTCTATCCTTATAA 2910 0.4237 MDDMDMDIPLPEELEFLESNSHFAEQQEEEDRHYYFPDLDPTAEIHESNSQQSPPPPDLAAPSAEPESSGHKRSCPPSPSPPEEEKRAKVRVAVEEDSSAAAADEDWLRYSPPPVPEGEPAVEEMAFEKEKTLSRYASEIDGECMPITAPSGNRVYAKLNRFQGEERVTKLDYNGYSTELSSEPVNVILERLEQEAFAKALEASSEGQSVLDVPEAQMVHERLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSIVFGSEIRSTSDDVLSALKRHSSIVHNQKPLNSKFPRMSRGPRWSNGRRYKNSRSMDESGSSKSIQDIWNAKSRNIGPPEPKILLLCGPPGLGKTTLAHVAARQCGYHVVEVNASDDRSTATIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISSERKPDAGKQSLGKGQQERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVNRLTYICNKEGMKASAIALTALAEYTECDIRSCLNSLQFLFKKKQALNVFDIGSQVVGQKDMSKNVLDIWKEIFHKRRTKKIERKSHRGKSFEFDSLYSLVSNRGDSNLILDGIHENVLRLNYHDPVMQKTVECFNNLGVYDLMHQYIMHTQQLPLYVYLPLVAITVHHIVSQVQKPTIEWPKSHQRYRTMMMEKMDILNTWHHKIPPYIARNLSASSFVEDLISPLLHILSPPTIRPVAFQLLSDKEKNDLAQLVSTMVSYTITYKTVKSDMLPQTQRCEVADGLALSLVPPISDFINFKDYTSNHNVLSVAMKQVLVHEVEKHKILQVSNDKTGAFTNGGHEVIETGTNNIPLANTNHATAVDMKTNENQANVLSQQLNANPTAVSPNLNSDKSSIAADCGKLLNMGNVKKPSRTSSSFFDRFKKVNVKGLQSNDRSLPEEATLDKDRYPILFKYNEGFTNAVKRPVRMREFLSL* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1145 969 SMART AAA_5 335 489 IPR003593 -
Gso10g1145 969 MobiDBLite consensus disorder prediction 18 119 - -
Gso10g1145 969 CDD AAA 334 428 - -
Gso10g1145 969 MobiDBLite consensus disorder prediction 18 40 - -
Gso10g1145 969 CDD HLD_clamp_RFC 486 544 - -
Gso10g1145 969 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 4 967 - -
Gso10g1145 969 Gene3D - 221 484 IPR027417 -
Gso10g1145 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 534 IPR027417 -
Gso10g1145 969 MobiDBLite consensus disorder prediction 78 94 - -
Gso10g1145 969 Pfam ATPase family associated with various cellular activities (AAA) 339 465 IPR003959 GO:0005524|GO:0016887
Gso10g1145 969 Gene3D - 486 556 - -
Gso10g1145 969 MobiDBLite consensus disorder prediction 285 319 - -
Gso10g1145 969 MobiDBLite consensus disorder prediction 429 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1145 Gso-Chr10 33884474 33937150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1145 337 532 Core DNA Replication Machinery Family AT5G22010 30.806 4.11e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1145 K11269 - gmx:100785041 1868.59