Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1132 ATGTGGACTCGGTTGCAGACTCAGTACTTCTCATCCAGCGAGTGGACTCGGTCCCAGAACAAGGTGTTCCCCATGTTCCCGGAGGAGGAAGGGGAGGGTCAGTGGGAGAAAGTTGCTGAGGAGATCATGAAACGCTATCATCAAGCATTGTTTCGTGATACGATCCATACTGAGTCGACTCGGGTTGAGTTGCCAGCTGACTCGGATGACTCGCCGGTGGATGATGCTAGGTCGCCAAAGTCTATTAGGAGAAGAAAAGGGAAATCCTGGAAGCCCTGGACTGAACAAGAACACAGGTTATTTCTTCTTGGACTGAAAATATATGGCAAAGGAGATTGGAAAAACATTTCAAAACATTGTGTCAAGTCAAGAACTCATATTCAAGTAGCTAGTCATGCCCAAAAATATTTCCTTCGCATGAAAGTTACGAAAAAAGAGAGCAAAAGAAAAAGCATTTATGACATAGCATTAAAGGACAAACATACAGAATTGCAGCGATTGCAAGCACAAAATCAAGAACGTGGAATGATGCAGAAGAATTCACTAGATGACTTTGCAATTGAATTTGAAATTTTAGTTGAAGATCCCTCTGTAATTGATGTTGAAATAGCTCACATTGAACTTACCAAGCTACGCGGAGTTAGGAAAGTAGACCTTGGGAAAATAGATTTGGTTCACCATGGAAGGTATGTCATAAACTTCTAA 705 0.4199 MWTRLQTQYFSSSEWTRSQNKVFPMFPEEEGEGQWEKVAEEIMKRYHQALFRDTIHTESTRVELPADSDDSPVDDARSPKSIRRRKGKSWKPWTEQEHRLFLLGLKIYGKGDWKNISKHCVKSRTHIQVASHAQKYFLRMKVTKKESKRKSIYDIALKDKHTELQRLQAQNQERGMMQKNSLDDFAIEFEILVEDPSVIDVEIAHIELTKLRGVRKVDLGKIDLVHHGRYVINF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1132 234 CDD SANT 92 137 IPR001005 -
Gso10g1132 234 SMART sant 89 139 IPR001005 -
Gso10g1132 234 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Gso10g1132 234 Gene3D - 90 142 - -
Gso10g1132 234 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Gso10g1132 234 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 139 IPR006447 GO:0003677
Gso10g1132 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 141 IPR017930 -
Gso10g1132 234 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 10 176 IPR043363 -
Gso10g1132 234 MobiDBLite consensus disorder prediction 61 81 - -
Gso10g1132 234 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Gso10g1132 234 ProSiteProfiles SANT domain profile. 93 145 IPR017884 -
Gso10g1132 234 MobiDBLite consensus disorder prediction 61 89 - -
Gso10g1132 234 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 10 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1132 Gso-Chr10 33191495 33193624 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso10g1132 Myb_DNA-binding 8.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1132 - - gmx:100776492 468.003