Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1131 ATGGCTTCTACACTTCATCGTGCATTGTCTCATTTACTCACTCTTGTAGCTTCACTTTCAATACTCCTTGTGCTCCCTTCCTCTTGTTTCAATCCCAGAAAGATTGTCAATGCTTCATACAACTCAAACGGTTTATATTGGTCACCAGCTGTGGCCACTTGGTATGGACCTCCCCATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTTTGGCAGTGTTGTTGGGGTACCTCCATTCTCATCAATGATATCTGCGGGAAGCCCTCTTTTGTTTGAATCAGGCAAAGGATGTGGTTTTTGTTATGAGGTGAAGTGCACAGGGAATTCTGGATGTTCAGGCAACCCTGTGAGGGTAGTGATCACTGATGAGTGTGCTGGATGCTCAGATGCTCAATTCCATTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCAGTTTCTGGCCAAGATGAAAAGCTACGCAACGCTGGCAAAATTGCCATTCAATATAGAAGAGTTGAATGCAACTATCCCGGTGTATACATAGCTTTTCACGTGGACTTAGGATCCAACCCCGAATATTTTGCAGTTTGTGCTGAATACGAGGATGGGAATGGTGATCTTGACAAAGTTGAACTCAAGGAAGCATTTTCAGCCTCATGGTATTCCATGCAGCGATCATGGGGTGCAATTTGGAAACTCAGCAAAGGTTCACCACTTAAAGCACCATTCTCCATCAGGCTAACAGACTCTGGCAAATCTGTTGTGGCTAACAATGTGATCCCTTCGGGCTGGAAACCTGGCCAGACTTATAGATCAATTGTGAATTTTAGAATCTAA 819 0.4469 MASTLHRALSHLLTLVASLSILLVLPSSCFNPRKIVNASYNSNGLYWSPAVATWYGPPHGDGSEGGACGFGSVVGVPPFSSMISAGSPLLFESGKGCGFCYEVKCTGNSGCSGNPVRVVITDECAGCSDAQFHFDLSGTAFGAMAVSGQDEKLRNAGKIAIQYRRVECNYPGVYIAFHVDLGSNPEYFAVCAEYEDGNGDLDKVELKEAFSASWYSMQRSWGAIWKLSKGSPLKAPFSIRLTDSGKSVVANNVIPSGWKPGQTYRSIVNFRI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1131 272 Gene3D - 33 169 IPR036908 -
Gso10g1131 272 Pfam Lytic transglycolase 84 163 IPR009009 -
Gso10g1131 272 SMART dpbb_1 83 163 IPR007112 -
Gso10g1131 272 Gene3D - 171 271 IPR036749 -
Gso10g1131 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 173 IPR007112 -
Gso10g1131 272 PANTHER EXPANSIN-B2-RELATED 14 272 - -
Gso10g1131 272 SUPERFAMILY PHL pollen allergen 175 266 IPR036749 -
Gso10g1131 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 266 IPR007117 -
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Gso10g1131 272 Pfam Expansin C-terminal domain 175 255 IPR007117 -
Gso10g1131 272 SUPERFAMILY Barwin-like endoglucanases 47 172 IPR036908 -
Gso10g1131 272 PANTHER EXPANSIN-B3 14 272 - -
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Gso10g1131 272 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1131 Gso-Chr10 33132878 33135545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1131 27 270 Expansin Gene Family AT1G65680 57.490 2.45e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1131 - - gmx:100778088 559.296