Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1120 ATGGAAGGAGAAGGAGGAAGCGCAACCAGAAAGAGAGGGAAAGATGGTGAGACTGAGACGACGACACGTTACAAAGGAATCAGAATGAGAAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCTTACTCCACGCCCGTCGCGGCGGCGCGTGCTTATGACACCGCCGTTTTCTATCTCCGGGGGCCCTCCGCGCGCCTCAACTTCCCGGAGCTTCTCGCCGCGGAGGGCCCCGCCGCCTCCGACGCCGTCATGTCCGCGGCCTCCATCCGGAAGAAGGCCACCGAGGTTGGCGCCCGAGTCGACGCACTTCACCGCCAGGACCCCCACGCGCCGCCTGCCGGAGAATTCGCCGACCGAGTCGACCTTAATAAGATACCCGAACCCGAGAATTCCGATTGTGACTACTGGGGCGGGGATTAG 453 0.6159 MEGEGGSATRKRGKDGETETTTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAAEGPAASDAVMSAASIRKKATEVGARVDALHRQDPHAPPAGEFADRVDLNKIPEPENSDCDYWGGD* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1120 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 5 143 - -
Gso10g1120 150 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Gso10g1120 150 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Gso10g1120 150 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 143 - -
Gso10g1120 150 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 MobiDBLite consensus disorder prediction 116 150 - -
Gso10g1120 150 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Gso10g1120 150 MobiDBLite consensus disorder prediction 1 23 - -
Gso10g1120 150 MobiDBLite consensus disorder prediction 116 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1120 Gso-Chr10 32646573 32647412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1120 24 148 AP2-EREBP Transcription Factor Family AT3G50260 64.706 1.61e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1120 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1120 K09286 - gmx:100789373 311.227