Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1111 ATGAACAACACTTCCAATTCTGATCATGGCATGAACAACCCTTCTGAGGAGCATAATGGATCATACGCATATTACTCGGTAGGGTTATCTCTAGGGATTCTCCTAATGATCGCTCTCATAAGTCTCATTTCCTTTTACTGTAGCCATAGAAGCTTGCAAAACAGCCAAGTAAGTGTCACTGCCAACACCAGCATGGAGCTTGATTCTGCCTTAACTATCCAAGTTCATCAGCAAAACTCTTTTGTGAACAATTATCCAGTGTTGTTGTTCTCCGAAGCCAAGCATCATAGGCCTGATTCAGAAACAATGACATCATCATGTTGCTCAATATGCTTGGCAGATTACAAGGACACGGACTGTGTGAAGCTTCTTTCTAATTGTGGTCACTTGTTTCATAGAGAATGCATTGATAGGTGGTTGCAGGTGAACCTCTCATGCCCCATGTGTCGAAATTCGCCATTGCCATCTCCTCTTTCAACTCCTCTTGCTGAAGCTACTCCTTTGGTAACAAGACGTGATTAA 522 0.4253 MNNTSNSDHGMNNPSEEHNGSYAYYSVGLSLGILLMIALISLISFYCSHRSLQNSQVSVTANTSMELDSALTIQVHQQNSFVNNYPVLLFSEAKHHRPDSETMTSSCCSICLADYKDTDCVKLLSNCGHLFHRECIDRWLQVNLSCPMCRNSPLPSPLSTPLAEATPLVTRRD* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1111 173 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso10g1111 173 SUPERFAMILY RING/U-box 84 155 - -
Gso10g1111 173 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 166 - -
Gso10g1111 173 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 166 IPR045899 -
Gso10g1111 173 SMART ring_2 108 149 IPR001841 -
Gso10g1111 173 MobiDBLite consensus disorder prediction 154 173 - -
Gso10g1111 173 Pfam Ring finger domain 108 150 IPR001841 -
Gso10g1111 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1111 Gso-Chr10 32352555 32353076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1111 7 171 C3H Transcription Factor Family AT5G06490 34.409 2.85e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1111 - - gmx:102670414 333.183