Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1107 ATGGGGAACACGTGTGTTGGTCCTAGCATTTCAAAAAATGGTTTTGTTCAATCAGTTTCTGCGGCGATTTGGCGGTCCCAATTGCCTGAAGGTTCAGTGTCTAATAGAGAATCTGTAAAAGAGGAAGCAACTAGTGTGCCCGAATCGCCCTTGCCTGTCCAAAACAAGCCTCCTGAGCAGATAACTATGCCGAAACAAGAAGCCAAACAAGAGGGAAAATCAGAAATAGAACCGGAAAAGGAACAGGATAAGAAGAAACAGAAGAAACGTGGTTCAGTGAAGAGAGTTTCTAGCGCAGGGCTTCGTGTTGATTCTGTGTTGCAAAGAGAGACCGATAATTTCAAGGAGTTCTTCACTCTTGGGAGAAAACTTGGACAGGGTCAGTTCGGGACAACGTTCTTGTGCGTGGAAAAGGCAACAGGGCTGGAGTGCGCCTGCAAATCTATTGCAAAGAGGAAGCTCGTCACCGATGATGATGTCGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGGCCGGGCATCCTAATGTTATATCCATCAAAGGTGCATATGAGGATGCCGTGGCTGTTCATGTTGTGATGGAATTATGTGCAGGTGGAGAGCTTTTCGATAGGATTATTCAGCGTGGCCATTATACCGAGAGACAGGCAGCCAAGCTTACTAAGACTATAGTTGGCGTTGTGGAAGCTTGCCATTCTCTTGGTGTGATGCACAGAGACCTTAAACCTGAGAATTTTCTCTTTGTCAATCAGCACGAGGATTCCCTTCTCAAAACCATTGACTTTGGATTATCTGTCTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTGGGCAGCCCATACTATGTTGCCCCGGATGTTTTGCGAAAGCGTTATGGTCCTGAGGCAGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGAATATTTGAACAAGTTCTGCGTGGTGATCTTGACTTTTCTTCTGATCCCTGGCCTTCAATTTCTGAAAGTGCAAAAGATTTAGTAAGAAAAATGCTTGTTCGCGACCCTAGAAGGCGGTTGACTGCACATCAAGTATTATGTCATCCTTGGATTCAAGTTGATGGTGTAGCTCCTGACAAGCCACTTGATTCTGCCGTATTAAGTCGCTTGAAGCAATTTTCTGCTATGAACAAGCTCAAAAAAATGGCCCTTATAATTATTGCAGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTAAAAGAAATGTTCAAGATGATAGATGCAGATAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTTTGAAAAGAGTCGGCGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCAGCTGATGTTGATAACAGTGGGACAATTGATTACGGCGAGTTCCTTGCTGCAACGTTGCACCGCAACAAAATTGAAAGAGAAGATAATCTATTTGCAGCCTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAGGAAGAACTTCAACAGGCTTGTGATGAGTTTGGCATAAAAGATGTCCGTTTGGAAGAGATAATCAAGGAAATTGATGAAGATAATGATGGACGCATAGATTACAATGAGTTTGTGGCTATGATGCAGAAAGGAAATCTTCCAGCGGTTGGTAAGAAGGGCCTAGAAAATAGCTTCAGCGTTAAGTTCAGGGAAGCATTAAAATTGTAG 1746 0.4238 MGNTCVGPSISKNGFVQSVSAAIWRSQLPEGSVSNRESVKEEATSVPESPLPVQNKPPEQITMPKQEAKQEGKSEIEPEKEQDKKKQKKRGSVKRVSSAGLRVDSVLQRETDNFKEFFTLGRKLGQGQFGTTFLCVEKATGLECACKSIAKRKLVTDDDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERQAAKLTKTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDSLLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPDVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPSISESAKDLVRKMLVRDPRRRLTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIIIAESLSEEEIAGLKEMFKMIDADNSGQITFEELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFLAATLHRNKIEREDNLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDNDGRIDYNEFVAMMQKGNLPAVGKKGLENSFSVKFREALKL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1107 581 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Gso10g1107 581 SUPERFAMILY Protein kinase-like (PK-like) 117 377 IPR011009 -
Gso10g1107 581 MobiDBLite consensus disorder prediction 66 86 - -
Gso10g1107 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Gso10g1107 581 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Gso10g1107 581 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Gso10g1107 581 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Gso10g1107 581 Pfam EF-hand domain pair 494 555 IPR002048 GO:0005509
Gso10g1107 581 Pfam EF-hand domain pair 424 484 IPR002048 GO:0005509
Gso10g1107 581 CDD EFh 424 483 IPR002048 GO:0005509
Gso10g1107 581 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Gso10g1107 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 69 565 - -
Gso10g1107 581 Pfam Protein kinase domain 119 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1107 581 MobiDBLite consensus disorder prediction 27 96 - -
Gso10g1107 581 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Gso10g1107 581 SMART efh_1 529 557 IPR002048 GO:0005509
Gso10g1107 581 SMART efh_1 495 523 IPR002048 GO:0005509
Gso10g1107 581 SMART efh_1 459 487 IPR002048 GO:0005509
Gso10g1107 581 SMART efh_1 423 451 IPR002048 GO:0005509
Gso10g1107 581 SUPERFAMILY EF-hand 416 556 IPR011992 -
Gso10g1107 581 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1107 581 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Gso10g1107 581 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Gso10g1107 581 ProSiteProfiles EF-hand calcium-binding domain profile. 529 560 IPR002048 GO:0005509
Gso10g1107 581 Gene3D - 401 560 - -
Gso10g1107 581 CDD EFh 496 555 IPR002048 GO:0005509
Gso10g1107 581 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1107 581 CDD STKc_CAMK 117 375 - -
Gso10g1107 581 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Gso10g1107 581 Gene3D Transferase(Phosphotransferase) domain 1 204 400 - -
Gso10g1107 581 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 69 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1107 Gso-Chr10 32126107 32133322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1107 1 581 EF-hand Containing Proteins AT5G04870 76.136 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso10g1107 Pkinase 3.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1107 K13412 - gmx:100819792 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1690 19 45840754 45845220 Gso10g1107 10 32126107 32133322 PCT
Gso3g1723 3 43083501 43087961 Gso10g1107 10 32126107 32133322 PCT