Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1098 ATGACAACAGCAGAAAAAACTTCAAACTTGGATCTCATACGCCAACACCTCTTTGGTGAAAACATCATCTCAGACTCCTCCTCCTTTGTCTCCAATCTCCATCATCATCCTGTGAAACTTGAACCCCCCTCATCACCAGAATTTGATTTCACCTCATATATCTTAGATAACAACACAAGCAGCAACTTCTTCACATTCCTTGAAGGCTATGATTTGGTGGCAGACATGAAGTTTGTAATTGATTCAGACAACACCACCACCATGGTGATCCCTTCAAAGGAGGTTATAAAGAAATGCAATATTAATTCTCCTGAAGAACAACCAATGGTGTCATCATCATCAGAAGAGAAGCCAACAATGAAAAAGTCAGAACATTATGATGAGGCAAAGCGTTATAGGGGAGTTAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGGACAAGGGTTTGGCTTGGAACATTTGACAGTGAAATTGATGCTGCTAAGGCCTACGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTCTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCTAAACCTAATAACAGTTGTGGCAGGAAAAGGAGAAGAGATCAGAACCATGATCATGAATTCGAGCTTCCATAA 663 0.4253 MTTAEKTSNLDLIRQHLFGENIISDSSSFVSNLHHHPVKLEPPSSPEFDFTSYILDNNTSSNFFTFLEGYDLVADMKFVIDSDNTTTMVIPSKEVIKKCNINSPEEQPMVSSSSEEKPTMKKSEHYDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNNSCGRKRRRDQNHDHEFELP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1098 220 MobiDBLite consensus disorder prediction 189 220 - -
Gso10g1098 220 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Gso10g1098 220 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Gso10g1098 220 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Gso10g1098 220 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Gso10g1098 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 211 - -
Gso10g1098 220 MobiDBLite consensus disorder prediction 200 220 - -
Gso10g1098 220 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677
Gso10g1098 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 211 - -
Gso10g1098 220 Gene3D AP2/ERF domain 130 191 IPR036955 GO:0003700|GO:0006355
Gso10g1098 220 MobiDBLite consensus disorder prediction 104 127 - -
Gso10g1098 220 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Gso10g1098 220 PRINTS Ethylene responsive element binding protein signature 171 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1098 Gso-Chr10 31730868 31731869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1098 1 214 AP2-EREBP Transcription Factor Family AT5G07580 40.789 4.73e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1098 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1098 - K09286 gmx:100500502 454.521