Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1097 ATGCAAAGTTCAATTTCACAATCTGATATTTTTATCACTGATTACCTTGTACCCCAAGAAGTTCCATTTCAATTTCAATTTCAAGATATGAGCAAGAATGACAACAACATGCCAATGAACCATACCAATAATAACCTTCAAATGCCTCAAATCACATCTTTCTCCAAGCCTCCAAGGTCCTCATCAAATCTAAGCAACCGCAAACCCTCCTTGAAAAACATCACAATCCCTTCCATAACCTCTGGTCTTGCAACAGCTATGTCACAAACAACAGCAACAACAACAACAATAGCTACAACCATGTATAACAACAACCAAGTTTCTTCTTCTTCTTTTTCTTCAGATGAAACCAACAATACCAAAGACGACAAGCACTATAGAGGGGTTAGAAGAAGGCCATGGGGGAAGTATGCTGCAGAAATCCGTGACCCTAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGATTGGATCAGATCAGTCTAAAGAAGAGTCATCATCATCATCATCATCAGTTTCAAGCAGCAGCATCGTCATCAAGGTTGGTGTGAAGAGAGAAAGAGAGGAAGAGAGTGAAAGGAAGAACAACTATGAGAAAAGTGAGTTTAACAACAATAGTAATAGTAATAAGCATGTGAAGAAAGAAGAGTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACAATCTTTAGTGTGCCTCCTTTGTCACCACTATCTCCACTAATGGTTGTTTGA 846 0.4019 MQSSISQSDIFITDYLVPQEVPFQFQFQDMSKNDNNMPMNHTNNNLQMPQITSFSKPPRSSSNLSNRKPSLKNITIPSITSGLATAMSQTTATTTTIATTMYNNNQVSSSSFSSDETNNTKDDKHYRGVRRRPWGKYAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEIGSDQSKEESSSSSSSVSSSSIVIKVGVKREREEESERKNNYEKSEFNNNSNSNKHVKKEECPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1097 281 Coils Coil 210 230 - -
Gso10g1097 281 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 SMART rav1_2 125 189 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 265 - -
Gso10g1097 281 SUPERFAMILY DNA-binding domain 125 185 IPR016177 GO:0003677
Gso10g1097 281 MobiDBLite consensus disorder prediction 212 229 - -
Gso10g1097 281 Pfam AP2 domain 125 175 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 ProSiteProfiles AP2/ERF domain profile. 125 183 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 PRINTS Ethylene responsive element binding protein signature 165 185 IPR001471 GO:0003700|GO:0006355
Gso10g1097 281 MobiDBLite consensus disorder prediction 30 73 - -
Gso10g1097 281 Gene3D AP2/ERF domain 124 185 IPR036955 GO:0003700|GO:0006355
Gso10g1097 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 20 265 - -
Gso10g1097 281 MobiDBLite consensus disorder prediction 107 129 - -
Gso10g1097 281 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1097 Gso-Chr10 31705926 31707364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1097 60 278 AP2-EREBP Transcription Factor Family AT5G51190 44.978 2.86e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1097 AP2 6.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1097 K09286 - gmx:100816416 421.009