Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1089 ATGACATGCAATGAGAAAAGTGAAGGGTGTTTGATGCTATTTGGTGTGAACATTCTTGCAAAGAACCCTATAAGAGATGGTGTCCCCAAATGTTCAAGTATGCTAAACCGCAGTTATTGCCATGGAGAGGAGGAGATTAATGCCAATAAAGAAAATTCTGAAGGTGGATATTTGTCTGATGTTCTTGTTCAACAACGACATAACTTCCATGACAAGAAAAATAAGGGAAAACCTTGGACTGAGAAAGAACATAAGGATTTCCTAAGTGGTTTAAAGCATCTTGGAAAAGGTAACTGGAAGGAAATCTCAAAGAACTATGTGAGAACAAAGACTCCCACCCAAGTTGCAAGTCATGCACAAAAGTATTTTCTTAGAATTGGTGCTATCGAGACAAGAAAACGTAGAAGAAGCCTCTTTGACATACCATTGGAAGAGGATGGAACTTCAAAAGTTTTCCGAGATTCCCATTAA 471 0.3822 MTCNEKSEGCLMLFGVNILAKNPIRDGVPKCSSMLNRSYCHGEEEINANKENSEGGYLSDVLVQQRHNFHDKKNKGKPWTEKEHKDFLSGLKHLGKGNWKEISKNYVRTKTPTQVASHAQKYFLRIGAIETRKRRRSLFDIPLEEDGTSKVFRDSH* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1089 156 CDD SANT 78 123 IPR001005 -
Gso10g1089 156 SUPERFAMILY Homeodomain-like 73 126 IPR009057 -
Gso10g1089 156 SMART sant 75 125 IPR001005 -
Gso10g1089 156 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 75 125 IPR006447 GO:0003677
Gso10g1089 156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 127 IPR017930 -
Gso10g1089 156 ProSiteProfiles SANT domain profile. 79 127 IPR017884 -
Gso10g1089 156 ProSiteProfiles Myb-like domain profile. 71 123 IPR001005 -
Gso10g1089 156 Gene3D - 77 129 - -
Gso10g1089 156 PANTHER TRANSCRIPTION FACTOR KUA1 2 146 - -
Gso10g1089 156 Pfam Myb-like DNA-binding domain 77 123 IPR001005 -
Gso10g1089 156 PANTHER TRANSCRIPTION FACTOR KUA1 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1089 Gso-Chr10 31059068 31060444 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso10g1089 Myb_DNA-binding 7.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1089 - - gmx:106794827 328.176