Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1075 ATGGCTATGTTTGATCTCAATGTGGACATCAACCATGGTGATGCTGATGCTGATTCAAGCTGTGATCAAAAGGGATTGCAGCTGCAAAGTTTCCCACCTGAAATCTCAGCTTCAAGAACCGCCAACTCCTCTGTGTGGAATCCTGCAGAGGATGATTCCTCAAACAATTCCTCTCCCTTGATTTTTGACATACTGAAGAAAGAGAGGGATAAGTCAGAGTTTGATGCTGCCACTGAAAGGGTCAATAAGGAGGCAGAGATAGTGACAAGGACCCTTTTCCCTGTGACTGCTGCTGCTGCTGCTGATAATGGAGCTAGAGTGCCTGATTTCAAATTGGGGCTGTGGGGGAAGACTCAATGCTTGAACTTGTGCTTACCAGAGCCTGATGGACAAAATGGACTCAGAACCTTACAGCAGAAGCTACCTCATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGCTCGCAGTACCGGGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCTCATATTTGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCATATGATAGGGCTGCAATAAAGTTTCGTGGAGTAGAGGCTGATATAAACTTTAGTTTAAGTGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTCTTACTTCGTCGACAAATCAATGGAAGCTCGAGAAGTTCAACATACAAAGGTGCATTAGCCCTTCGCAAAGATGCTCAAGGAGAACCACGAAGGGCACCATTTATTGGCAAGACATTTTATCCCAACTCATCCATCAAGTGTGATGATGGAAAAGTGGACGCAAGTTTTAAGCCCTGTTCCTATAAGGGAGAAATAATTGCGAATTCGAGCATGGCAGGCACTAGCCATAATCTTGATTTGAGCCTAGGAATTTCTCCATCTTCTAAAAGATTGAAGAATGACTATAGTGGAGGGTATTCCTTTGGATGTATGGCTTCATTGGCTTGTAAGATACCCAAGGAAAGAGGAACAATGGAGAAGGCCATGGTGGACAGAATAAGAAATGTTCCTTTGCAAAAAATTTCCAACTTGGCTTGGCAACTTTGCAGCAATGGTAGTAGCATTGTCCCAAGGCCATTGCAACCAAATGCAGCATCATCAGGATTCGTCTCTTCTTCTAGCTGTCTCATCACCGACACTTCCAATCAACACAAATATTAA 1242 0.4452 MAMFDLNVDINHGDADADSSCDQKGLQLQSFPPEISASRTANSSVWNPAEDDSSNNSSPLIFDILKKERDKSEFDAATERVNKEAEIVTRTLFPVTAAAAADNGARVPDFKLGLWGKTQCLNLCLPEPDGQNGLRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVEADINFSLSDYEEDLKQMRGLSKEEFVLLLRRQINGSSRSSTYKGALALRKDAQGEPRRAPFIGKTFYPNSSIKCDDGKVDASFKPCSYKGEIIANSSMAGTSHNLDLSLGISPSSKRLKNDYSGGYSFGCMASLACKIPKERGTMEKAMVDRIRNVPLQKISNLAWQLCSNGSSIVPRPLQPNAASSGFVSSSSCLITDTSNQHKY* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1075 413 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Gso10g1075 413 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Gso10g1075 413 CDD AP2 156 212 IPR001471 GO:0003700|GO:0006355
Gso10g1075 413 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Gso10g1075 413 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Gso10g1075 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 405 - -
Gso10g1075 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 405 - -
Gso10g1075 413 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Gso10g1075 413 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1075 Gso-Chr10 30341129 30346786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1075 157 328 AP2-EREBP Transcription Factor Family AT4G36920 55.789 2.06e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1075 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1075 K09284 - gmx:100783626 824.698