LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g1016	ATGTTGTTACTCTTACTCAACTACCTTTTCTTTCTGTTCAATTTTTCTATAACAAAAACCGAAGCCATTGATAACCTTCAGTATCTGAATCACAGCTGTTCAAGCAACAAAACCTTCACTCCAAACAGCACCTACCAATCCAACCTCCAAACCCTCCTCACCTCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACACCACAACGGGTGGCGGAGACGCCGCCGGCGAAAACATTTACGGCTCCTTCATGTGCCGTGGCGATGTCAGCAACCACACGTGCCAAGAATGTATTAAAACTGCAACCCAACAAATAACCGTACGGTGTCTCAACTCCAAAGAGGCCTTAATTTGGTACCACGAATGTATGGTTCGTTATTCCAACCGTTGTTTTTTCTCCGCCGTGGAAGAATGGCCTAGGTTCAACTTCGTGGATTTCAACGTGAATACGAATTCAACAGAAGGAATCTATGGGTATTGGTTGCTATCCAAAACGTTGAGTGATGCAGTGGGTGAGGCTGTGAAAGCTGGCACCAAGAAGTTTGCAACGAAAAACGCTACCGTTTTTGGGTCTCAAAGAGTGCATACTCTTGTTCAGTGCACGCCAGATCTATCAAGCGAAGATTGCAGTAAGTGTTTGGGTGATATTATGAGAGATATTCCTTTGTGTTGTCTCGGAAGGAGAGGTGGAATGGTTCTATTTCCAAGCTGCACTTTGATGTTTGGGATAGGACAGTTCTACAGAGACTTTCCTCATGGTACACCAGAATCAAAATCAGTTGGTCAGGAAAGTGTCACTATAGAGGGTTTGCAATTTGATTTGGATATAATTGCAGCTGCAACAAATAACTTTTCACATGAAAATAAGATTGGTAAAGGTGGATTTGGAGAAGTTTACAAGGGAATTCTTCCTAATGGACGACGTATAGCTGTGAAAAGATTATCGACAAATTCATCACAAGGTTCGGTTGAATTCAAAAATGAGATTTTATCAATAGCAAAACTACAGCATAGAAATCTTGTGGAGTTAATAGGTTTTTGTCTAGAAGTGCAAGAGAAGATTCTTATTTATGAGTACATGTCCAACGGGAGCCTTGATAACTTTTTATTTGATCCTCAACAAAAGAAGTTGAGCTGGTCACAGCGTTATAAAATTATAGAAGGAACTGCACGAGGAATTCTTTATTTACATGAACATTCTCGCCTTAAAGTTATACATCGTGATCTTAAACCAAGTAATATTCTATTAGATGAAAATATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTATTGAACTAAATCAGGATCTTGGGAAAACTCAAAGAATCGTTGGAACATTTGGTTATATGTCTCCAGAATATGCAATATTTGGACAATTTTCTGAAAAATCTGATGTTTTTAGTTTCGGAGTTATGATTATAGAGATTATCACGGGGAGAAAGAATATAAATTCTCACCAATTGCCCGATATTGTAGATAGCCTCATGAGTTATGTTTGGCGACAATGGAAGGATCAAGCACCACTGAGCATATTGGACCCAAATTTGGAAGAAAATTATTCTCAATTTGAAGTCATTAAGTGCATTCATATTGGTTTACTATGCGTTCAAGAAAATAAAAATATTAGGCCTACTATGACAAAAGTTATTTTTTATCTCGATGGTCACACACTTGATGAGTTGCCATCTCCACAAGAACCACCATTTTTCTTTCGAGATATAAAGGATAAAAAAATACCTATGCAACATTTTTCTGTAAATAAGATGTCTACAAGTATATTTTATCCTCGATAA	1803	0.381	MLLLLLNYLFFLFNFSITKTEAIDNLQYLNHSCSSNKTFTPNSTYQSNLQTLLTSLSSHATTAQFFNTTTGGGDAAGENIYGSFMCRGDVSNHTCQECIKTATQQITVRCLNSKEALIWYHECMVRYSNRCFFSAVEEWPRFNFVDFNVNTNSTEGIYGYWLLSKTLSDAVGEAVKAGTKKFATKNATVFGSQRVHTLVQCTPDLSSEDCSKCLGDIMRDIPLCCLGRRGGMVLFPSCTLMFGIGQFYRDFPHGTPESKSVGQESVTIEGLQFDLDIIAAATNNFSHENKIGKGGFGEVYKGILPNGRRIAVKRLSTNSSQGSVEFKNEILSIAKLQHRNLVELIGFCLEVQEKILIYEYMSNGSLDNFLFDPQQKKLSWSQRYKIIEGTARGILYLHEHSRLKVIHRDLKPSNILLDENMNPKISDFGMARIIELNQDLGKTQRIVGTFGYMSPEYAIFGQFSEKSDVFSFGVMIIEIITGRKNINSHQLPDIVDSLMSYVWRQWKDQAPLSILDPNLEENYSQFEVIKCIHIGLLCVQENKNIRPTMTKVIFYLDGHTLDELPSPQEPPFFFRDIKDKKIPMQHFSVNKMSTSIFYPR*	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g1016	600	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	259	585	-	-
	Gso10g1016	600	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	14	250	-	-
	Gso10g1016	600	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-
	Gso10g1016	600	Gene3D	-	25	132	IPR038408	-
	Gso10g1016	600	Gene3D	-	144	247	IPR038408	-
	Gso10g1016	600	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	259	585	-	-
	Gso10g1016	600	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	14	250	-	-
	Gso10g1016	600	Gene3D	Phosphorylase Kinase; domain 1	253	360	-	-
	Gso10g1016	600	Pfam	Salt stress response/antifungal	33	129	IPR002902	-
	Gso10g1016	600	Pfam	Salt stress response/antifungal	167	242	IPR002902	-
	Gso10g1016	600	ProSiteProfiles	Gnk2-homologous domain profile.	27	132	IPR002902	-
	Gso10g1016	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	405	417	IPR008271	GO:0004672\|GO:0006468
	Gso10g1016	600	SUPERFAMILY	Protein kinase-like (PK-like)	269	577	IPR011009	-
	Gso10g1016	600	CDD	STKc_IRAK	291	558	-	-
	Gso10g1016	600	ProSitePatterns	Protein kinases ATP-binding region signature.	291	313	IPR017441	GO:0005524
	Gso10g1016	600	SMART	serkin_6	285	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g1016	600	Gene3D	Transferase(Phosphotransferase) domain 1	361	565	-	-
	Gso10g1016	600	Pfam	Protein tyrosine and serine/threonine kinase	288	503	IPR001245	GO:0004672\|GO:0006468
	Gso10g1016	600	ProSiteProfiles	Protein kinase domain profile.	285	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g1016	Gso-Chr10	26401143	26406451	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g1016	9	600	Receptor kinase-like Gene Family	AT4G05200	41.343	1.76e-174	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso10g1016		PK_Tyr_Ser-Thr	6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g1016	-		-	gmx:100783647	1167.53