Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1000 ATGCCGCTGGGGGACCCACCCGCATGGAGAATGCCAAGATCGTCATCATCCAGTTCTAGATTTTGCCACCTAAAATCGGCATCGAATAGAGCATTGTGGAACATATTTCCTGCCACAAGTCACATTGATCTTTTTGGACATGTTGAATGTGTACAGATTGATGAAAATGTCAAAAGAGAAATAATTAATCATAGGTCTCTAAGACATCCTAACATTATCAAGTTTAAGGAGGTCATTTTAACACCTACTCATCTGGCCATAGTAATGGAATATGCATCTGGTGGAGAACTATTTGAGAAAATCTGCAATGCAGGACATTTTAATGAGGGTGAGGCTCGTTTCTTTTTTCAACAACTCATATCGGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGCTTGACACTTCATTTGAATATATGTGATTTTGGATACTCCAAGGTAAGTTACACTAATGAAGCACCTACAGATAAGTGTGCATTCTTGAGTCTCAACCATGTGATGAAATTGGATTGCACTATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGAAAGACAATTCAGTTGGAAAAAAACTTGCCACGTGGTAGCTTGGGGTGA 699 0.4049 MPLGDPPAWRMPRSSSSSSRFCHLKSASNRALWNIFPATSHIDLFGHVECVQIDENVKREIINHRSLRHPNIIKFKEVILTPTHLAIVMEYASGGELFEKICNAGHFNEGEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSLTLHLNICDFGYSKVSYTNEAPTDKCAFLSLNHVMKLDCTIADVWSCGVTLFVMLVGSYPFEDPNDPKDFRKTIQLEKNLPRGSLG* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1000 232 Gene3D Transferase(Phosphotransferase) domain 1 92 229 - -
Gso10g1000 232 PANTHER SERINE/THREONINE KINASE 52 221 - -
Gso10g1000 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Gso10g1000 232 SMART serkin_6 39 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1000 232 Pfam Protein kinase domain 54 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1000 232 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1000 232 Gene3D Phosphorylase Kinase; domain 1 39 91 - -
Gso10g1000 232 SUPERFAMILY Protein kinase-like (PK-like) 52 221 IPR011009 -
Gso10g1000 232 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 52 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1000 Gso-Chr10 25591088 25598191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1000 52 227 CBL-interacting serine-threonine protein kinases AT2G26980 41.622 7.86e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso10g1000 Pkinase 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1000 K14498 - gmx:100788440 285.419