Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0986 ATGGATCGCAAATCCAAACGCAACCACTCGTTCTCCTACTCCACTCTCTTCAACCTCGAGCCTTTGAAGAACTTTAAACTTCCACGTGAAGATGATGATGATTTTGATTATTATGGGAATAATAGTCAGGAAGATGAGAGCAGAGATAGCCAAGGTGAAAGGGAAAATTACTGTAATGGAAATGTGCACGCAAGGGAGCAGAATTCGTCGAGTAAGAGGGTGTGGTCTGAGAACAGTGATACTGATGATGAGAATAAGGGAAGATATTATGGGACACACATGACACAGGAACGATATCAATCAATGCTTGGAGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAACACTGATCAAAATCAGGTTGTTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAATTCAAAAGTCAGGGAATGATTGTAGGGGAGCATCACATGCTGAAGAAAGGGCATCGGAATGGCTTCAGGATCAGAAACAAGGAAACTTCAGTCGTGCAGATTTCAAGCAGCAATATGGCACTGATAGGATTATGTATGAACCTGCTGTTTTGGACATTGGGAATGGTATCTCTTATGAGATTCCTCCAATTTACGATAAGTTGGCCCCGATGCTGAACCTTCCAAACTTCCTGGATATCCATGTCGATGAATTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGATAAAAGGTTTGGGACTAGAAACCAAGCAGGAATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCATAAATTCAGCTTGAAAGTGTCTGATGTTGGATTGAATTTATCCATTCCGGAGGGTGCTGCTGGAACCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCGAAGAAGCAAAAGGTAAGGAAAGATTCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGGAAGATTTGGATAAACATTGTAAGAAGAGACATAGCAAAGCATCATAGGAATTTCACTAATTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGCTCTGGAAACGAGTAGATAAAGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCTTTACCCTCGGTAGATGAAAACACAAATGATCAAGATGTACTGTTTGACTCTTCAGACGCTGGGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTAAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTCCGCCAGGTGGATGAAGCCGATTCACTTACACGGCAATTAGCAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAATAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGATTAAAAGACTTCCATATTGGGGAGGACTTTCAGAGCGAGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTTATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACGTTGAATGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAGGATGTAATTTCTGAGCTGACTAATAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAAGGGAGCACGTACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTCGGGGAGTTAGAGAATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGATACCAAAACTTGTCTATAAAGAGATTATACAAAGTTCGGCTGTTGGTCATGGTATCTGCAGGGAATCTTTTCAGAAATATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACTGGTTCTTTTATGGAGCGACTGTTATTTTCAATGATGAGATGGGAACGGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATCGGTGATCCTGAATGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCACCAATGCTCCTTTTGAGGCCTTGATGGTCTCACATCAGGATAGGCTTTCATCAAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACTAGAGCTCCCCCAATTTGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTTCTCATTTAATTGAAGAGATCGATTCTGAATTACCCATTTCACAGCCTGCACTTCAGTTCACGTATGGTATTTTTGGCTCTTCACCGCCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTGGATATATTATTGAAGCGCTTACGAGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTTGATGATGTTCAATTGCAACAGAAGTTAAAGGAAATTCCTCTCCAGGTAAAGAGTAAGCAAAAGAAAAAACCTAACAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTTTGGAGGATCTAACAAACTGTCTAGACCAGGGAACTGCAAATCATGATACTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGCCCAAAGTGTTCTCAGAAGAAGATGAAAGGCAGTATGTCTAATAGATAA 4380 0.4089 MDRKSKRNHSFSYSTLFNLEPLKNFKLPREDDDDFDYYGNNSQEDESRDSQGERENYCNGNVHAREQNSSSKRVWSENSDTDDENKGRYYGTHMTQERYQSMLGDHVQKYKRRRKDAMSNTDQNQVVVPLVKSNNGLKIQKSGNDCRGASHAEERASEWLQDQKQGNFSRADFKQQYGTDRIMYEPAVLDIGNGISYEIPPIYDKLAPMLNLPNFLDIHVDEFYLKSTLDLGSLAAMRAADKRFGTRNQAGMGEPLSQYESLQARIKAMPASNSPHKFSLKVSDVGLNLSIPEGAAGTIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVRKDSALIEKEEMDRIGKIWINIVRRDIAKHHRNFTNFHRKQLIDAKRFSDYCQREVKMKVSRSLKWIKGANIRTRKLARDMLLLWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPSVDENTNDQDVLFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRMLTNAFDSACLRFRQVDEADSLTRQLAGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEIKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTNKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELENIYYPGGHNPISYEIPKLVYKEIIQSSAVGHGICRESFQKYFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWERKFLDEVLDFLIETTIGDPECYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPTNAPFEALMVSHQDRLSSNARLLHSAYTYIPPTRAPPICAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSECNGPRKPDNPSHLIEEIDSELPISQPALQFTYGIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKSKQKKKPNKAIRINEEGDASLEDLTNCLDQGTANHDTSMDPEGPKSSNKKTKTASDKQKPSPKCSQKKMKGSMSNR* 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0986 1459 MobiDBLite consensus disorder prediction 1405 1459 - -
Gso10g0986 1459 Gene3D - 565 843 IPR038718 -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 481 501 - -
Gso10g0986 1459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1202 1386 IPR001650 -
Gso10g0986 1459 SMART ultradead3 586 781 IPR014001 -
Gso10g0986 1459 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Gso10g0986 1459 SMART helicmild6 1228 1311 IPR001650 -
Gso10g0986 1459 PANTHER CHROMATIN-REMODELING ATPASE INO80 18 1441 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Gso10g0986 1459 PANTHER HELICASE SRCAP-RELATED 18 1441 - -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 24 53 - -
Gso10g0986 1459 CDD SF2_C_SNF 1190 1322 - -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 22 89 - -
Gso10g0986 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 818 IPR027417 -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 1408 1424 - -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 54 75 - -
Gso10g0986 1459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 481 515 - -
Gso10g0986 1459 MobiDBLite consensus disorder prediction 1425 1446 - -
Gso10g0986 1459 Coils Coil 427 466 - -
Gso10g0986 1459 Pfam DNA-binding domain 351 479 IPR020838 GO:0003677
Gso10g0986 1459 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Gso10g0986 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1376 IPR027417 -
Gso10g0986 1459 Pfam Helicase conserved C-terminal domain 1201 1311 IPR001650 -
Gso10g0986 1459 Gene3D - 1171 1422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0986 Gso-Chr10 25126193 25141867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0986 643 891 RAD5 or RAD16-like Gene Family AT1G61140 23.226 5.49e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso10g0986 SNF2_N 1.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0986 K11665 - gmx:100796167 2832.74