Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0978 ATGGCACGTTCTCTAGACAAGATAAAGAACATCGATGGCTCAAAGGAAACTCTTAAACTTACTGTGAGGATCACTGATCTATGGTTTATTGGGACACCTAACAAATCTGAGCAAGCTGGGATGGTTTTTGTGGACTCTGATGGTGATGAGATCCATGTTGTTTGTAAACAAGACCAATTGAAGTCTTGGAAGATGGACTTCAAGGAAAATTGTACTTATGTCATGCACAATTGTAAAGTGCTAAAAAACAACGATCAGTACAGAGTTTGTGATCACCAATTTAAATTGGTGTTTATTGGGGTTACTGTTGTAAGGCAGTGTGTTCAAGAGGACCTCCCTTTTAGAAAATATAGGTTTGCTGGATTTGCGGATGTTGTGGCTAGCCAGTTTGAACCTGGGCTATTGGTTGATGTTATTGGTGTTGTGGAGGAGGTTGTCTTTCGCCATGTTTCAGGAAAAGGTAGAAGGGTAGTCTTTAAACTAAAGGACTTGAGCCAGCAATTGCTATCTTGCACTTTGTGGGACGATTATTGCTTGCAGTTTTTAAAGTTCTTAGATGATCATGAAGGTCATGGCCCAATTACAGTTCTATTGACCCATGATAGAATAAAGGAAGCTCAGGGATCTTATCCGCCATCGATCAACAATTCTTTCAAGGCTTCAAAGTTAGTTATTAACCAACCGGTGATGGAGATTCAAGAATTCAATGAACGGCTTGCAGAGTTGGGCATTCAGGCCCGGTCAGTTTTTAAATCCCATGGTAAAGGCAGTTCACAACTTTCAGGTTCTATCCAATTATCATCAAAGGAATCATTCTTTGGAAAGGCTGAGGCAAAGACTATTGCTGAGATTAACACCATCTCTGAAGAAATTGTTTGTGTAACTGTTGGCACAATTACTAGGATTGTTATGGACAATCATTCATGGTGTTATACAACTTGCATTCAGTGCCATAAAAAAAGTGATGTAGAGATGGCGCCCTTCACATGTGCATGCGGCAAATACAATAAGGAAGATGTGCTTAGGTATAGGCTTGAGGTGATGATCAACCACGGAGATGAAAGCACAAAATTCCTGCTTTGGGACCGTGAATGTAGTGAATTAATTGGTCAATCAGCTAATGCAGTTAATAAGCTTAAAATTGAAGATGGTGATGTTGATTTAACTGCTTCACCCCAAGCACTTGATAAGCTGCTGGGTTATGAACTTGCTTTTAAGATAAAGGTGCAACCCAAGTTCAGGAATTCTGCTGTTTTGAAATGTTCAACTGACTCAAGCTTAATAAATGTTGTGATGGATATGCTAGCTGATGCTGAGACATCTTCAAAAATCAATATCCCAGCCTTTGATTCCAATCATTCTACCCAACATGAATCTCAATCTATGTCTGTGACAGCAGACCATGATCAACTGCTTGGGCTCCCATTGACACCTACAAAGCGGCAGACATTTCAAGATTGTGATGATGAAGCAGGGAGCTCTCAAATTTCACCTGCACAACTTTCATCCAACAAATTAAAAAAACTTGGCACAATTTAG 1539 0.3983 MARSLDKIKNIDGSKETLKLTVRITDLWFIGTPNKSEQAGMVFVDSDGDEIHVVCKQDQLKSWKMDFKENCTYVMHNCKVLKNNDQYRVCDHQFKLVFIGVTVVRQCVQEDLPFRKYRFAGFADVVASQFEPGLLVDVIGVVEEVVFRHVSGKGRRVVFKLKDLSQQLLSCTLWDDYCLQFLKFLDDHEGHGPITVLLTHDRIKEAQGSYPPSINNSFKASKLVINQPVMEIQEFNERLAELGIQARSVFKSHGKGSSQLSGSIQLSSKESFFGKAEAKTIAEINTISEEIVCVTVGTITRIVMDNHSWCYTTCIQCHKKSDVEMAPFTCACGKYNKEDVLRYRLEVMINHGDESTKFLLWDRECSELIGQSANAVNKLKIEDGDVDLTASPQALDKLLGYELAFKIKVQPKFRNSAVLKCSTDSSLINVVMDMLADAETSSKINIPAFDSNHSTQHESQSMSVTADHDQLLGLPLTPTKRQTFQDCDDEAGSSQISPAQLSSNKLKKLGTI* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0978 512 CDD RPA1_DBD_B_like 137 239 - -
Gso10g0978 512 SUPERFAMILY Nucleic acid-binding proteins 277 415 IPR012340 -
Gso10g0978 512 Gene3D - 110 248 IPR012340 -
Gso10g0978 512 MobiDBLite consensus disorder prediction 447 466 - -
Gso10g0978 512 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Gso10g0978 512 CDD RPA1_DBD_A_like 19 104 - -
Gso10g0978 512 CDD RPA1_DBD_C 281 409 IPR013955 -
Gso10g0978 512 Pfam Domain of unknown function DUF223 41 127 IPR003871 -
Gso10g0978 512 PANTHER REPLICATION FACTOR A 1, RFA1 11 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso10g0978 512 Gene3D - 3 107 IPR012340 -
Gso10g0978 512 SUPERFAMILY Nucleic acid-binding proteins 117 239 IPR012340 -
Gso10g0978 512 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 381 - -
Gso10g0978 512 Gene3D - 262 428 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0978 Gso-Chr10 24450970 24453419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0978 1 387 Core DNA Replication Machinery Family AT5G08020 22.030 9.21e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0978 - - gmx:102667793 772.311