Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0956 ATGGGTACTCCGGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCGGATTGCAAGCTCATCGATTTCTTGCCCTTCACCTGCGATTGCTGCGACCAGGTGTATTGTTTGGACCACAGAAGTTATAATAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACAGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACCGAGTGCGACCCATCGAATTATGAGAAAGTCACAAAGAAGAAAAAATGCCCTGTCCCTGGGTGCAGAGTGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACAGTAGAGCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCACAAAGGTGGAATCAAGTTTTTCATTCATGAATCTTTTGAATGGGAGTAAAAAGCAGGAGTCCAAACCCAAGTCAAGTGCAACCTCATGGAGTACAAGCTTTCTTAATGCGGCTTCTAACGTTCGAGCTTCGGCTGAGGCTGGTGTGTCAAAGTTAAGTTCCTGGCAGACAGCAAGGGGTGGGGTTGGACAGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCTAAGTTTTCCTCAGTTACTACTTTGGTTGACCATGTGCAAAAAGTTCATGAAAGGAGTCGCAACCGATCTGGAGCAAAGGTTACAATTGATGTTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCGGTGGCCCTAGTGGAACATGTTGAGAGGGATCACGGTGGAAGTTCTAGATCATAG 837 0.454 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDCCDQVYCLDHRSYNKHQCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCRVILVFSNTIKCRDCTVEHCLKHRFGPDHKCPGPTKVESSFSFMNLLNGSKKQESKPKSSATSWSTSFLNAASNVRASAEAGVSKLSSWQTARGGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSRNRSGAKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0956 278 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 277 - -
Gso10g0956 278 ProSitePatterns Zinc finger C2H2 type domain signature. 251 272 IPR013087 -
Gso10g0956 278 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gso10g0956 278 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gso10g0956 278 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gso10g0956 278 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gso10g0956 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 240 IPR013087 -
Gso10g0956 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 277 IPR013087 -
Gso10g0956 278 Gene3D Classic Zinc Finger 193 275 - -
Gso10g0956 278 Pfam C2H2-type zinc finger 213 235 - -
Gso10g0956 278 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 277 - -
Gso10g0956 278 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gso10g0956 278 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gso10g0956 278 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Gso10g0956 278 ProSitePatterns Zinc finger C2H2 type domain signature. 214 235 IPR013087 -
Gso10g0956 278 Gene3D - 86 170 IPR035896 -
Gso10g0956 278 Gene3D - 2 60 IPR035896 -
Gso10g0956 278 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gso10g0956 278 SMART c2h2final6 212 235 IPR013087 -
Gso10g0956 278 SMART c2h2final6 249 272 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0956 Gso-Chr10 22722416 22728621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0956 1 278 C2H2 Transcription Factor Family AT2G41835 63.604 3.17e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0956 zf-AN1 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0956 - - gmx:100794037 587.415