Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0952 ATGGAGAAGATTGCAGCACTCACTGCTAATACTATCCACACCCCTCTCTTACCCAACAACACCACTCTTCCAAAGACTTCATCTTTTCAACCCTTTTTTTCTAACCAGCTACTTGGCCTCCCCTTATCTTCTTCTTCATCTTCTGCTTCTTCTTTAACCGCCGCCAAACGGTTCTCTTGCAGGCCTATCAAGTGTTCCGTTTCCGAAGCCACAGAGCCCAAAACAGAGAAGAAGAGGCAATTGCTGAGAAGAGGGGATGTGAGGAACATAGCTATTGTTGCTCACGTTGACCATGGGAAAACTACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTATTTCGTGATAATCAGTTTGTTCAGGAAAGGATAATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATCACAATACTGAGTAAAAATACATCTGTCACTTATAAAGATGCAAAGATTAATATAATAGATACTCCAGGTCACTCTGATTTTGGTGGTGAAGTGGAGCGCATCTTGAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGGTCACTCAGTTGTCGTGGTTGTGAATAAAATAGATAGGCCATCTGCTCGCCCAGAATATGTTGTCAACTCTACTTTTGAACTCTTCATTGAATTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGACTCCTGAAAATCTGGCAGAAGACCTTGGTCCATTGTTTGAATCTATCATTAGATGCATTCCTGGACCACGTATTGACAAAGATGGTGCCCTTCAAATGTTGGTTACAAATATTGAGTATGATGAACATAAAGGGCGCATAGCAATTGGGCGTGTGCAAGCTGGAGTTTTAGAAAAAGGCTTGGATGTTCGAGTATGTACTTCAGATGATTCATGTAGATATGGAAGAGTTACTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAAATAAGGTGGAGGCAGGAGATATATGTGCAGTATGTGGAATTACTGATATTCAGATCGGGGAGACAATTGCTGATAAAGTATCTGGGAAACCACTACCTTCAATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCTGATACATTTGTTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTTATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGGATGAAAAACTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACAAATGTTCGATATGCAAGGAGTTGGATTGGAAGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGATTGCGGAATTCAATTTTAACTGCCTCCCGAGGGACTGCTATTCTCAACACTGTTTTTGATAGCTATGGGCCTTGGGCTGGTGAAATTAGTACTCGGGATCAAGGCTCATTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCCTTGAATGTTTGCAAGAAGAAAGCTGCAACCAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACGCCATTGGACTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCGCAAGTATCCGAATGTCCAAGAATCCAAAAATTACAAACAAGAAAACAAGGTAG 2043 0.4195 MEKIAALTANTIHTPLLPNNTTLPKTSSFQPFFSNQLLGLPLSSSSSSASSLTAAKRFSCRPIKCSVSEATEPKTEKKRQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPEYVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLTPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLEKGLDVRVCTSDDSCRYGRVTELYVYDKFNRVPANKVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVDEKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGLEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGEISTRDQGSLVAFEDGTSTSYAISSSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPASIRMSKNPKITNKKTR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0952 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 287 IPR027417 -
Gso10g0952 680 Gene3D - 85 280 IPR027417 -
Gso10g0952 680 SUPERFAMILY Translation proteins 233 380 IPR009000 -
Gso10g0952 680 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 87 679 IPR006298 GO:0005525
Gso10g0952 680 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 67 677 - -
Gso10g0952 680 PANTHER BNAC09G43450D PROTEIN 67 677 - -
Gso10g0952 680 CDD BipA_III 387 465 - -
Gso10g0952 680 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 SMART EFG_C_a 477 566 IPR000640 -
Gso10g0952 680 SUPERFAMILY EF-G C-terminal domain-like 385 469 IPR035647 -
Gso10g0952 680 Gene3D bipa protein 565 673 IPR042116 -
Gso10g0952 680 Pfam Elongation factor Tu domain 2 301 370 IPR004161 GO:0005525
Gso10g0952 680 TIGRFAM small_GTP: small GTP-binding protein domain 88 227 IPR005225 GO:0005525
Gso10g0952 680 CDD TypA_BipA 86 279 - -
Gso10g0952 680 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Gso10g0952 680 Gene3D Elongation Factor G (Translational Gtpase), domain 3 388 671 - -
Gso10g0952 680 CDD BipA_TypA_II 287 380 - -
Gso10g0952 680 Pfam Elongation factor Tu GTP binding domain 87 277 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 280 IPR000795 GO:0003924|GO:0005525
Gso10g0952 680 Pfam Elongation factor G C-terminus 478 563 IPR000640 -
Gso10g0952 680 SUPERFAMILY EF-G C-terminal domain-like 480 595 IPR035647 -
Gso10g0952 680 Gene3D - 471 564 - -
Gso10g0952 680 CDD BipA_TypA_C 480 559 IPR035651 -
Gso10g0952 680 Gene3D Translation factors 281 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0952 Gso-Chr10 22485059 22496221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0952 87 214 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 5.35e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0952 K06207 - gmx:100794574 1316.98