Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0939 ATGCGTGAGCTTTGCCTGATTCTGATTTACATTGCTACTGTTTATGCCTTTCTGTTTCTATTTTCGTCCAACTTTTTTTGCCGGATTGCTCCTGTTTGCTGCTGTTTGCAAAACCAAAAAGTGATGTCTCGCAAAGAAAATCTGATATCTGAGTTACACACCATAAAAGGAACATGGAAAATAGATGTGCGTATCACTGATCTTTGGCAAGCTCGAAAGCAAAATAGTAAACAAACAATTGAGATGGTGTTGATGGACCAAACGGGTTCAAAAATTGGAGTTACTCTCTGGCAAGAACTCTTCACTGAATTGCGGGACAAGTTACAGTGTGGTTCTTCTTATTTGATTCAGAACCTGAGGATTGTTGACAACCAATCTGAATACAGAGTCAGCCCAGCTCCATATTTGGTTTATTTCCTAAAAACTACATCTGTCAAGGAAATTCACCGTCCAGAAATTCCTTCTAATGTTTATCTCATAACTCCTTTTACTGATATAATCTCTGGCCTCGCACCACGCCATACTTTAGTGGATATTGTTGGTGTCATTGCTGATCTGATCGATGTTAAGACAGTTAATCCCCCTCACAGGATGATAGTCAGACTCAGGGATAACAGTAACTGCGACATTCTAATAACTGTTTGGGAGGACTATGCTATTAAGCTACATGATGCTATTGACAGAAACCTTCTGCTTCAGGAACCATTGGTTGTTATGTTGACCTTAGGTAAAATCAAAGATGCTACAGGTGTGTCTGGTGTTGGTTAG 768 0.3971 MRELCLILIYIATVYAFLFLFSSNFFCRIAPVCCCLQNQKVMSRKENLISELHTIKGTWKIDVRITDLWQARKQNSKQTIEMVLMDQTGSKIGVTLWQELFTELRDKLQCGSSYLIQNLRIVDNQSEYRVSPAPYLVYFLKTTSVKEIHRPEIPSNVYLITPFTDIISGLAPRHTLVDIVGVIADLIDVKTVNPPHRMIVRLRDNSNCDILITVWEDYAIKLHDAIDRNLLLQEPLVVMLTLGKIKDATGVSGVG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0939 255 PANTHER REPLICATION FACTOR A 1, RFA1 39 252 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso10g0939 255 Gene3D - 152 254 IPR012340 -
Gso10g0939 255 CDD RPA1_DBD_A_like 60 145 - -
Gso10g0939 255 SUPERFAMILY Nucleic acid-binding proteins 48 148 IPR012340 -
Gso10g0939 255 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 39 252 - -
Gso10g0939 255 Pfam Domain of unknown function DUF223 81 175 IPR003871 -
Gso10g0939 255 SUPERFAMILY Nucleic acid-binding proteins 161 252 IPR012340 -
Gso10g0939 255 Gene3D - 45 147 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0939 Gso-Chr10 21065512 21067405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0939 49 252 Core DNA Replication Machinery Family AT2G06510 25.676 5.08e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0939 - - gsj:114371519 512.301