Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0934 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCACAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTCATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCACAACAGATTAAAGCGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCCGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGACTCGAACTCAGCAAACACCTGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCTAAGCCTGGAATTGTAAATGCAGGATTGAATCCGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAGCAACAACAACAACAGCTCCTCGCACAGGTTCAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGGTTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCATCAACAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCGGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCAACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTATATCCAAAGGTTTGATCATGTATGGTACTGATGGAGTGGGCGGTCTTGCATCTTCGACAAATCAGCTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCCTTCTGAGCATGCTACGGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAATATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTCCCTTTACATACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAACTTTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTCCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCCGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACGTTACAGGGACACTCTGCCGAGGTACACTGTGTCTGTTGGGATACAAATGGAGATTACTTAGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAGTGCATTCATGAACTTAATTCTAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCTAGCTACTCCACTCTTTTGGTTATTGGAGGATACCAGTCATTGGAACTATGGAACATGGCTGAGAATAAATGTATGACAATTCCAGCTCACGAGTGTGTGATATCTGCTCTAGCACAGTCACCACTTACAGGAATGGTTGCTTCGGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAG 2352 0.4392 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQTRTQQTPDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIVNAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSHQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGISKGLIMYGTDGVGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPKKTELFCSCDNNNEIRFWSISQYSSTRVFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQMHTLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPLTGMVASASHDKSVKIWK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0934 783 Gene3D - 636 783 IPR015943 GO:0005515
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Gso10g0934 783 CDD WD40 498 783 - -
Gso10g0934 783 Gene3D - 478 635 IPR015943 GO:0005515
Gso10g0934 783 Pfam LisH 10 36 IPR006594 GO:0005515
Gso10g0934 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Gso10g0934 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Gso10g0934 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Gso10g0934 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Gso10g0934 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Gso10g0934 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Gso10g0934 783 Pfam WD domain, G-beta repeat 749 783 IPR001680 GO:0005515
Gso10g0934 783 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Gso10g0934 783 Pfam WD domain, G-beta repeat 543 576 IPR001680 GO:0005515
Gso10g0934 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Gso10g0934 783 Coils Coil 87 107 - -
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Gso10g0934 783 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 783 - -
Gso10g0934 783 MobiDBLite consensus disorder prediction 320 413 - -
Gso10g0934 783 SMART Lish 8 40 IPR006594 GO:0005515
Gso10g0934 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Gso10g0934 783 MobiDBLite consensus disorder prediction 323 407 - -
Gso10g0934 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Gso10g0934 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Gso10g0934 783 SUPERFAMILY WD40 repeat-like 496 783 IPR036322 GO:0005515
Gso10g0934 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0934 Gso-Chr10 20827185 20845235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0934 496 743 U-box Gene Family AT2G33340 26.792 1.15e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso10g0934 WD40 0.011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0934 - - gmx:100797756 1497.64