Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0917 ATGTCAGATGAACTTTTTGTTGGAGGTGTTGAGAGTAGAAAACTCAAACGTAAGATTGAGGAGGCATCTTCCACAGATGTTGTGGATTCAGAGTTCGTATTGTCTCTAGGTCTTGGCAATAACAAAATGACTGGTGAATCCTCATCTAATTTCTTATGCAAGTCATTGAAAGGCCATAAGGAGTCACCATGTTTTGCTTCAAAACTTGTAGAGAACACTAATAATCAAGTGATTAGGCCTAAGCAACGCCAATTCTCCTGCAAATTTTGTGATAAGAAATTTCCAAGCTCTCAAGCTTTGGGGGGACACCAAAATGCTCATAAGCGTGAAAGAGTTCTATCAAGGATAAATAAAGACATGGGAACTTTTGGACTTGGTGCTCACATGTGCTCATACTCATCCATTCCACATCAGTATCCTTTTCGTGGACCAACATCCCTTTATTATGGGGCTAACATGCACCCCATGGCTCACATGTCGGTCATGTCTTGGCCACATTTTGTGCCTGGCTCTAGCAACCAAGGGTTGCACAACACATCCATCTCAGGGCAACGATTTGGAATGACCAACCCTTGGGGTATATCTGCTGAAACTCCACCGAATGTGTATCATAGGGATGTGGTATTTGGTGCTGAGCATAATCAAGTTCCTTCACTTGATGTAGCTCATAGAGCAACAAATGGCTCGTTCTAG 693 0.4257 MSDELFVGGVESRKLKRKIEEASSTDVVDSEFVLSLGLGNNKMTGESSSNFLCKSLKGHKESPCFASKLVENTNNQVIRPKQRQFSCKFCDKKFPSSQALGGHQNAHKRERVLSRINKDMGTFGLGAHMCSYSSIPHQYPFRGPTSLYYGANMHPMAHMSVMSWPHFVPGSSNQGLHNTSISGQRFGMTNPWGISAETPPNVYHRDVVFGAEHNQVPSLDVAHRATNGSF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0917 230 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Gso10g0917 230 PANTHER ZINC FINGER PROTEIN JAGGED 1 226 IPR045320 GO:0003700
Gso10g0917 230 Gene3D Classic Zinc Finger 65 121 - -
Gso10g0917 230 Pfam C2H2-type zinc finger 85 109 - -
Gso10g0917 230 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gso10g0917 230 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 226 - -
Gso10g0917 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0917 Gso-Chr10 19477171 19477863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0917 64 158 C2H2 Transcription Factor Family AT5G10970 35.789 3.06e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0917 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0917 - - gmx:102669436 479.944