Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0896 ATGATGAACAACTTGACCATTGAGACTGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAACGATGTTGAAGGTTTCAAGCGAATGATTGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGTCGTCAAAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCATTGATGGTTGCTGCTACTTATGGTAGCATTGATATTCTGGATCTGATTCTCTCACTTTCTGGCTGTGATATTAATAAACCTTGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCTGCTTCGGGTGGGTCTGAAAATGTTGTTGATGTTGTTATATTGCTTCTAGCAGCGGGGGCTGATCCAAATTCTGTGGATGGCAATGGTCATCGTCCAGTTGATGTCATTGTTGTTCCTCCCAAGCATGAGTCTGTTAGAAACAATCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGTGTGTAATCTCAGGGTGATCACGGCTCCATCAAATGCATATTCTCCACCTTTGTCAACATCATCAGAGAATGGGTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTCATTTCTTCTGCATCAGACAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGACATCAAGAATAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAAGTCCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTGCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCAGCACAATATCGAACTCGTCTTTGTAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACATTGCCGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGCTCAAGCACATCTGCTATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACGGTTCACTCCGCCTATGTCGCCCTCTGCCAATGGCATGTCACACCCTTCTGTTGCCTGGCCCCAACCAAATGTCCCAGCCTTGCATCTACCAGGGAGTAATATTTATTCCAGTCGTTTGAGATCTTCATTCAATGCTAGAGATATTCCTGTGGACGACTTTGACTTGTTGCCTGACTATGATGTTCAGCAACAGCTCCTTAATGAGTTCTCTTGCCTCTCTAAACAGCCTATGAATTCTAATGCTATGAACCGCTCTGGTCGCATTAAAACCCTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCTCCTCGGTTTGCTGATCCTGCATTGGCTTCAGCTGTTTTTTCTCCAACACATAAATCAGCTTTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCACCTGTGAACACAAACTTTTCTTCTAAAAATGTTGAGAATCCACTATTGCATGGTGCCTCTTTTGGGGGTCAATCATCAGGAAGGATGTCTCCTCGAAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGTTCAGCATGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCCACTGTTGCTGCTGCCGCTGCCGCCGCTGGTTCCCCTGCCAATTCTTGGTCAAAATGGGGATCCTCCAATGGTACGCTGGATTGGGCTGTCAATGCAGATGAATTAGGGAAGCTGCGTAGATCATCTTCATTTGAGCACGGGAATAACAGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCATCTGAGATTAAGGAGAATCCGACGATGATGACGACGACGACAACTATCTCAAGCGTTGCAGCAGCTGGATCCTCCAGTGAGGTTTCAAATATGAGCACACAAATGGATGCTGTTGATCATGCGGTGTTAGGAGCTTGGCTTGAACAAATGCAGCTTGATCAACTTGTGGCTCAGCAAAATTAA 2133 0.4538 MMNNLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDILDLILSLSGCDINKPCGLDKSTALHCAASGGSENVVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHESVRNNLEALLQTDDSIAVCNLRVITAPSNAYSPPLSTSSENGSPSAPDFQLKSKLNDGFISSASDKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHIAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMNMLPGSPSSMSVMSPSRFTPPMSPSANGMSHPSVAWPQPNVPALHLPGSNIYSSRLRSSFNARDIPVDDFDLLPDYDVQQQLLNEFSCLSKQPMNSNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAFLNQFQQQQSLLSPVNTNFSSKNVENPLLHGASFGGQSSGRMSPRNVEPISPMSSRISVLVQHEKQQQFRSLSSRELGSNSATVAAAAAAAGSPANSWSKWGSSNGTLDWAVNADELGKLRRSSSFEHGNNSEEPDFSWVQSLVKESPSEIKENPTMMTTTTTISSVAAAGSSSEVSNMSTQMDAVDHAVLGAWLEQMQLDQLVAQQN* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0896 710 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Gso10g0896 710 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
Gso10g0896 710 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Gso10g0896 710 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Gso10g0896 710 SUPERFAMILY Ankyrin repeat 10 139 IPR036770 -
Gso10g0896 710 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Gso10g0896 710 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Gso10g0896 710 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 2 707 - -
Gso10g0896 710 PANTHER UNKEMPT FAMILY MEMBER 2 707 IPR045234 -
Gso10g0896 710 SMART ANK_2a 93 125 IPR002110 GO:0005515
Gso10g0896 710 SMART ANK_2a 58 88 IPR002110 GO:0005515
Gso10g0896 710 SMART ANK_2a 11 40 IPR002110 GO:0005515
Gso10g0896 710 Gene3D - 272 334 - -
Gso10g0896 710 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Gso10g0896 710 Gene3D - 9 159 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0896 Gso-Chr10 17594693 17598835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0896 4 704 C2H2 Transcription Factor Family AT5G12850 53.296 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso10g0896 Ank_2 1.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0896 - - gmx:100813554 1367.06