Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0893 ATGGAAGGTTGCAAAATGTCTCCACAAAAGCCATGGAAGAAAGGGCCAACAAGGGGCAAAGGTGGCCCTCAAAACTCTTCATGTGAGTATAGAGGTGTTAGGCAGAGAACATGGGGAAAATGGGTGGCTGAGATAAGAGAGCCAAAAAAGAGAACAAGGCTTTGGCTTGGCTCTTTTGCCACAGCAGAAGAAGCTGCCTTGGCCTATGATGAGGCTGCAAGGAGACTCTACGGCCCTGATGCTTACCTTAACCTCCCCAACGTGATGATGATGCAAAAAATTCAACCAACAGCAAGCTTCACAAATTCCACCATCACCACCACAAAATCTCACAAGTACTTCAATTGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCCTCAAGTGGTGGATTGCTCAACCTCAATGCTCAACCTAGTGTCCATGTCATCCACCAGAGGCTGCAAGAGCTCAAGCAAAATGGGGTGGTTGCAACAAGTCAAAATCAATCATCACCGCATGCTAGTTCATTATCCACTCATCCAAAGGTTGTGGTGGAACTTGAAAACTTAGACATCCAAAACCATGCAGAAACTCTTGTTCCTCCACTGCAAGAGGGTAATTCTCAAGTTTCATCACAGAAAACTATTATTGGTGGTGATTTTGAGAAGCCCCAGATAGACCTACTTGAGTTTCTTCAGCAGATGGGAATACTAAAGGAGGAAAGAGAGGAAGAAAAAACTGATAGCTCAGGAAGTTCAACAACAGTGTCTGAAGCAGTATCAAGAGATGATCAGAGTGAACAACAACCTGGAGTGTTTTCTGATGATATGAGTAGTGTTAACTGGGAGGAATTGATGGAGATGCATGAGCATGACCGTGGAGTTGTAGATAATTATCATGCATTAGAAGAAATCCAGTTTGAAGCATATGACATAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTATTAA 960 0.4323 MEGCKMSPQKPWKKGPTRGKGGPQNSSCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPNVMMMQKIQPTASFTNSTITTTKSHKYFNWFPSKNFISMFPSSGGLLNLNAQPSVHVIHQRLQELKQNGVVATSQNQSSPHASSLSTHPKVVVELENLDIQNHAETLVPPLQEGNSQVSSQKTIIGGDFEKPQIDLLEFLQQMGILKEEREEEKTDSSGSSTTVSEAVSRDDQSEQQPGVFSDDMSSVNWEELMEMHEHDRGVVDNYHALEEIQFEAYDINEDLTFSTSIWNY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0893 319 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Gso10g0893 319 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 316 - -
Gso10g0893 319 MobiDBLite consensus disorder prediction 244 269 - -
Gso10g0893 319 MobiDBLite consensus disorder prediction 234 269 - -
Gso10g0893 319 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Gso10g0893 319 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gso10g0893 319 MobiDBLite consensus disorder prediction 1 28 - -
Gso10g0893 319 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0893 Gso-Chr10 17363834 17365097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0893 5 319 AP2-EREBP Transcription Factor Family AT3G57600 46.667 1.47e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0893 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0893 - - gmx:100808719 629.017