Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0863 ATGGCAGACCCTTACTCCAATTTCTTCTCACCACTAGGTAGTAATTTCTTCCACTACCCTTCTCCAAGCCCTTCATCCCAGCACCACCATCCCTATGCCCACAACTTCCTCAACCAAAATGGTTCCAACATCATCAATAACAACCACAACACCTTTTTCCACTTCCACAATTTTCAAACCACTATTTGTTCTTCTTTTTCTTCTTCTTCTTCGCCCCCTTCCCCTCCCTTGAGAGTAGCCCTTCCTCTTCTAACCCTCAGCCCAAAAAATGAAGAGGAACAAGAAGAGGATGATGACCAAGAACAAGATCAGGATCACGAGATTCTTCAGGACAATTTTTGCACAGCCATGGATGTGGAAGAGAACTACAATAACAACAGAACCCTTCTTCATCACCTTCACCCCAAAGAGGAGGAACAAGATCAAGAAGATGGTCCTGATGAAACTGTCACTGTTGCACTTCACATTGGGTTGCCAAGCCCTAGTGCTGCTGAGATCGCTTCTGTGCTTTCTTCAGCTTGTTCCACAGACCAAGAACAACAACAACAACAACAACAAGATGGTAATAATAATAATAATGGGAGTGATGATTTTTCTTCTTCAGGGTTCTTGTCTAACAGACTCAACAAGGGACAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCCGTGAGAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAGGAAGAGCCTGCATCTGAAGTAGAACAGGATCGATAA 1158 0.4508 MADPYSNFFSPLGSNFFHYPSPSPSSQHHHPYAHNFLNQNGSNIINNNHNTFFHFHNFQTTICSSFSSSSSPPSPPLRVALPLLTLSPKNEEEQEEDDDQEQDQDHEILQDNFCTAMDVEENYNNNRTLLHHLHPKEEEQDQEDGPDETVTVALHIGLPSPSAAEIASVLSSACSTDQEQQQQQQQDGNNNNNGSDDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0863 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Gso10g0863 385 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Gso10g0863 385 SUPERFAMILY beta-beta-alpha zinc fingers 294 332 IPR036236 -
Gso10g0863 385 Gene3D Classic Zinc Finger 290 366 - -
Gso10g0863 385 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 40 384 - -
Gso10g0863 385 Gene3D Classic Zinc Finger 227 250 - -
Gso10g0863 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 332 IPR013087 -
Gso10g0863 385 SMART c2h2final6 228 250 IPR013087 -
Gso10g0863 385 SMART c2h2final6 312 332 IPR013087 -
Gso10g0863 385 PANTHER ZINC FINGER PROTEIN WIP2 40 384 IPR043584 GO:0003700|GO:0010468
Gso10g0863 385 MobiDBLite consensus disorder prediction 171 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0863 Gso-Chr10 13773627 13776569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0863 1 383 C2H2 Transcription Factor Family AT3G57670 59.204 5.62e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0863 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0863 - - gmx:100776343 686.411