Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0860 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGGTTCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAAAACAAGAGGTATGTGCTGAAGAAAATTTGCTTGGCCAAGCACGCAGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTAATAGCAAAACTACATTACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGATGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCGAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTTTGCAAATGGTTGACTCAGTTATTACTGGCTGTGGACTACCTTCACTCCAATCGGGTACTCCATAGAGATATCAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGACTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGCTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCGACGGCATCTGAATTATTAAAGAATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAATAGTAACTCAAAGGATAAAACAAAAAACAAATCTAGCGGTAGCAAAGACCATTGGGACAAGGAGGCAGCATTGGCAGGATTAGTAAATCGTTTGGATCGACTTTATCCATTAGAGGGAAATGGAGATGTACAGATACGAAACTGGCATAATGATGGCAAGCTAGCAGTGTCAACCATTACAGAAGACAACCTTGAGACTAAAATGGTTGATTCGACCAGCTATACTGCAGAGTTTTCTACTAGTATTAGTGGCTCAAAAGATGGATCAACAACATCTGAATCAACTGTTTATAGTGTGTACAAGGAAGGAGACTTTAAAAATAGACTTACAAGGGACTCGGCTGACTGTGAGATCACTTCAAAGAGTACAATGGATTCTGTGCATGAAGATCAAGGACTTGATGGTCATAAGTCATACGCAATTGACATAAATATGGTGATTAATAAAGTTGAAGATACTTTATCCAATGAAGATTTCAATACAGATGAAGCACTTAGTGAAGGTGCCAAACCTGAGGACTCCAGTAAATCAATAATGTCCAGTGAAGACAGCAACGGTAATGATAAAGATGAGTTCATTGATGAGACCACTTCAAAGGGTACTCTAGATTCTGTGCATGAAAAACAAGGATTTACAGCTGAACATTTTCAGAACTCAGATGTCATTGACACAAGTGCAGTGTCTACAAAAGTTGAAGATAATTTTTTCAATGAAGATAGAACAGAAGCAGAGAGGGAAAATGCCAAACCTGAGGACTCCAGAAAGTCAATAGTGTCCAGTGAAAACAGCGGTGGTAATGATAATGATGGGTCCATTAATGAGATCACTTCTAAGAGTATGCTAGATTCTGTGCATGAAGAACAAGGATTTACAGCTGAACATTTTCCGAAGTCAGATGTGATTGACACAAATGCAGTGGCTACTAAAGTTGAGGATAATTTTTCCAATGAAGGTTTTGACCAAACTGAAACAGAGAGGGAAAATGCCAAACCAGATGACTCCCGAAAATCAGTAGTGTCTAGTGAAAACAGTGATGGTAATGATAACGATGGGTCCATTGATGAGAAGACATCAAAGAGTACGCTTGATTCTTTGCATGAAGAACAAGGATTTACTGCTGAACATTTTCTGAAGTCAGATGTGATTGACACAAATGCAGTGGCTTCAAAAGTCCAAGATAATTTTTCCAATGAAGGTTTTGACCAAACTGAAACAGAGAGGGAAAATGCCAAACCTGATGACTCCAGAGAATCAATAGTGTCCAGTGAAAACAGTGACGGGAATGATAAGGATGGGTCCGTTGATGAGACCACATTAAAGAGTACACTCGATTCTGTGCATGAAGAGCAAGGGTTTATAGCTGAACATGTTCAAATGTTAGATGTTGAAATAGATGCAGCGGCTTCAAAAGTTGAAGACAAATTTTCTAATGACGGATTTGATAAAGCTGAAGCACAGAGGGAAGACGCCAAACTTGAGAGCTCTAGTAAATCAATAATTTCCTGTAAAAACAGCAATGGTAATGATGAAGATGGATCTGGTTATGAGATCACATCTAACAGTATGCTAGATTCTGTAGGTGAAGAAAAAAGACTTTCTGCTGAATACTTTCAGAAGTCTGATGCAATTGACATAAATGCAGAGACTACAGAAGTTGAAGATAAACTTTCCAAAGAAGGCTTTGATAGAGCTGTAACACAAGAGAAAGATGATAAACCTGAGGACTCCAATAACTCATTGTCTAGTGAAGACAGCAACAGCAACGATAAAGATGGGTCCATTGATGAGGAAAGGTCATCACCAATTGCACATGCTGTTAAGGTTGAGCATGACACTGACACTGGAAACAGGTTGAAGGAAAATAAAAACCCTGAAGCATTTACAGAAGGCTCACGCATGGACGGCTTGGCTTGTGAGAGTAATGAAACGCGTCCGGGTAAGGATGAAGGACAAGCAGATACACACACAATCAGTTGTTCAATGCATAAAGAAGTTGACAATGCTGTCATGGCTGATAAGACACCAAATGGCGTTCCATCAAGGACACACATATCAAGAGGTGGTGATAATACTTGCCATCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGTGCACAGTTACTTCAGCAAGGACAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTCATGGCCTCACAAAAACTTCATCCTGAGACATAG 3123 0.3993 MESSGKMEDYEVVQQIGRGALGATFLVLHKIENKRYVLKKICLAKHADKSKVTAQQEMDLIAKLHYPYIVEYKDAWVEKDDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDIKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPAVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLKNPHLQPYVLRCRNASSIFLPVHLINSNSKDKTKNKSSGSKDHWDKEAALAGLVNRLDRLYPLEGNGDVQIRNWHNDGKLAVSTITEDNLETKMVDSTSYTAEFSTSISGSKDGSTTSESTVYSVYKEGDFKNRLTRDSADCEITSKSTMDSVHEDQGLDGHKSYAIDINMVINKVEDTLSNEDFNTDEALSEGAKPEDSSKSIMSSEDSNGNDKDEFIDETTSKGTLDSVHEKQGFTAEHFQNSDVIDTSAVSTKVEDNFFNEDRTEAERENAKPEDSRKSIVSSENSGGNDNDGSINEITSKSMLDSVHEEQGFTAEHFPKSDVIDTNAVATKVEDNFSNEGFDQTETERENAKPDDSRKSVVSSENSDGNDNDGSIDEKTSKSTLDSLHEEQGFTAEHFLKSDVIDTNAVASKVQDNFSNEGFDQTETERENAKPDDSRESIVSSENSDGNDKDGSVDETTLKSTLDSVHEEQGFIAEHVQMLDVEIDAAASKVEDKFSNDGFDKAEAQREDAKLESSSKSIISCKNSNGNDEDGSGYEITSNSMLDSVGEEKRLSAEYFQKSDAIDINAETTEVEDKLSKEGFDRAVTQEKDDKPEDSNNSLSSEDSNSNDKDGSIDEERSSPIAHAVKVEHDTDTGNRLKENKNPEAFTEGSRMDGLACESNETRPGKDEGQADTHTISCSMHKEVDNAVMADKTPNGVPSRTHISRGGDNTCHQRADALESLLELCAQLLQQGQLEELAAVLRPFGEDAVSVSSRETAIWLTKSLMASQKLHPET* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0860 1040 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0860 1040 Gene3D Transferase(Phosphotransferase) domain 1 90 276 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 634 651 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 667 750 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 747 831 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 823 881 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 510 589 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 586 670 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 884 1026 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 511 - -
Gso10g0860 1040 ProSiteProfiles Protein kinase domain profile. 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 586 670 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 511 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 823 881 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 884 1026 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 747 831 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 667 750 - -
Gso10g0860 1040 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 510 589 - -
Gso10g0860 1040 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 604 624 - -
Gso10g0860 1040 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 873 912 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 759 807 - -
Gso10g0860 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Gso10g0860 1040 MobiDBLite consensus disorder prediction 542 569 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 780 807 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 518 541 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 831 863 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 446 479 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 759 779 - -
Gso10g0860 1040 CDD STKc_Nek 9 264 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 678 729 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 512 651 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 685 728 - -
Gso10g0860 1040 MobiDBLite consensus disorder prediction 821 938 - -
Gso10g0860 1040 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0860 Gso-Chr10 13571730 13579814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0860 14 265 MAP Kinase Kinase Kinase AT1G09000 31.179 5.29e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso10g0860 Pkinase 4.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0860 K08857 - gmx:100818558 1945.63