Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0851 ATGGAGCAAACCACTCTCGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCCTCATGGCTGCTCCGGCGCCGGAAACCGTCAATTCCTTCAAGGCGTTGCTCGAGCTTCCGTCGACGCAGGCCGTCGAGCTCCTCCACTCGCCTGAGCGCGCCAGAAAACCGCTGCGCCACAGTCCGAAACCTCCAACGCCACCGCCACCGCATCCGCCAACCTCACCTTCCTTCACCGCCTCCGCATCCGCCGCCACCGCCAACCTCACCTTCCCCTCCAACGCCGCGCTGATCGAACGCGCCGCCAGGTTCTCCGTCTTCGCCGGCCAGAACTCCAACTCGAACTCGAACTCGCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGCTCCACTCACGGCGGCGGAGGCGGCGGCTCCGTCTCCGATCTCGCCATGGAGAACAAGAATCCGAAGACCGCGAAGCGGAAGGAGCGAGAGAAGAAGGTTAAAGCATCATCGAGGAAGAGCAAGAGCGTCGCCGCCGCCGCCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTAGATAAAATCATCAACCATGTGCAATCTCTACAGAATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCTTACTGGCTACCGAAGGAGTGACTCCAATGGACTGTAACTTCCCTCCGACAGTTGCACCTGTCATGTGGCCAGAAATCCCACAGAACGGAAACAGACAACAATATCAGCAACCGTGGCAGTTTGATGCATTCCACCAACCCCTTTGGGGGAGGGAAGAAGACAAAACTAACATGACTCCAGAAAACTCACTCTGGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1074 0.5521 MEQTTLEAIQFNEEIQGLMAAPAPETVNSFKALLELPSTQAVELLHSPERARKPLRHSPKPPTPPPPHPPTSPSFTASASAATANLTFPSNAALIERAARFSVFAGQNSNSNSNSPEVKRELPETDSNPSSTHGGGGGGSVSDLAMENKNPKTAKRKEREKKVKASSRKSKSVAAAADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPVIDFNLDSLLATEGVTPMDCNFPPTVAPVMWPEIPQNGNRQQYQQPWQFDAFHQPLWGREEDKTNMTPENSLWSYDSSANSVSLHSNQLKMEL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0851 357 Coils Coil 238 258 - -
Gso10g0851 357 Pfam Helix-loop-helix DNA-binding domain 202 249 IPR011598 GO:0046983
Gso10g0851 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 248 IPR011598 GO:0046983
Gso10g0851 357 MobiDBLite consensus disorder prediction 58 73 - -
Gso10g0851 357 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 357 - -
Gso10g0851 357 MobiDBLite consensus disorder prediction 43 80 - -
Gso10g0851 357 CDD bHLH_AtBPE_like 188 273 - -
Gso10g0851 357 MobiDBLite consensus disorder prediction 106 184 - -
Gso10g0851 357 Gene3D - 195 266 IPR036638 GO:0046983
Gso10g0851 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 267 IPR036638 GO:0046983
Gso10g0851 357 SMART finulus 204 254 IPR011598 GO:0046983
Gso10g0851 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 357 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0851 Gso-Chr10 13373522 13379515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0851 2 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 46.373 6.59e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0851 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0851 - - gmx:100810862 603.208