Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0848 ATGGATTCCCATATCCATCATCATCATCATCAGGGTTACCAACAACATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCAAGTTCTCTTCTTTCAAATCTCACTCCTTTTGTGAGTGAAGACTTTGGTTCTAGCAGCTTCAGAGAGTTGCAAGGAAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGAGTGTATGGTGGGGGGTTGCCACCTCACTATCCAAGGCATCGTGGTTCTTCTTCCTCTGCTGCTACTTCGAGTTCTGCTATGGAAGGGTCTTTTGGATTGGTGGGTTCAATGGGAATGAATCATGAAACGCCGCAAAACGGGCTTGGGTCAAGTCTTCTCAGGCATAGTACTTCCCCTGCTGGCCTTTTCTCCAACAATAACATTAACTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCAGTAATGGTGAACTTAGTCCATGCATTAACGGATTGAAGAATCAGGTTAGCTTCTCACCAAGAAATGCTTCTTCGCTCGGAATGTTGTCGCAGATCTCCGAAATAGGGAATGAAGACATTGAGGCAACTAGTCCTGATGATGATACAAGGCATGAAGGTAATGATACTCAACAATATGGCCCTGGATTCCCCTATGGTTCTTGGAATGATACTCCACAACTCTCAGAAAATCTCAGTGGCTTGAAAAGAGGAAGAAGTAGCAATGAAAAGATGTTTTCTGATGAAATTCAGAATGGAGAGCTAGGAAACCAAGTTAATATGTTATCACACCACTTGAGTTTACAAAAAACTTCAGCAGAGATGATTACTATGAAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCAGATACAAATCAAATTGCTTGA 1155 0.4277 MDSHIHHHHHQGYQQHQNQPSSGLLRFRSAPSSLLSNLTPFVSEDFGSSSFRELQGNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHRGSSSSAATSSSAMEGSFGLVGSMGMNHETPQNGLGSSLLRHSTSPAGLFSNNNINFQNGFATMKGVGNYGGVNGSNGELSPCINGLKNQVSFSPRNASSLGMLSQISEIGNEDIEATSPDDDTRHEGNDTQQYGPGFPYGSWNDTPQLSENLSGLKRGRSSNEKMFSDEIQNGELGNQVNMLSHHLSLQKTSAEMITMKKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRAKCECTSMQKADTNQIA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0848 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 376 - -
Gso10g0848 384 MobiDBLite consensus disorder prediction 1 25 - -
Gso10g0848 384 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Gso10g0848 384 Coils Coil 353 373 - -
Gso10g0848 384 Gene3D - 307 380 IPR036638 GO:0046983
Gso10g0848 384 PANTHER TRANSCRIPTION FACTOR BHLH130 15 376 - -
Gso10g0848 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Gso10g0848 384 MobiDBLite consensus disorder prediction 202 234 - -
Gso10g0848 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 372 IPR036638 GO:0046983
Gso10g0848 384 MobiDBLite consensus disorder prediction 77 99 - -
Gso10g0848 384 SMART finulus 312 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0848 Gso-Chr10 13110833 13115241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0848 18 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.950 1.16e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0848 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0848 - - gmx:100810203 743.421