Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0819 ATGGATGAATACTACTGTTGTGCATACCCGCACATCTCTGCCTCCGATTTCGCGTCAGAAACTCCATTTTGTCCCGATGATCAACGCTTCAGTGTAGAAGTTGCGTACACGAACATGTACGTTCTGAATGCCCGCGAATTCGAAACTTCCGAATATACCACTCACCACAGTTTTTCAAACATCTCAAAGGACGAAATAATGCAAGAAACAACGATCGTGTCTTGGCTTTCCAGCATGGGTGTCCCTAGCGAGGCTCACAGGTCTGTCGTGGCAAAAGTATTGCAATGTGCGCGTGGCATGGCGAATGATAGGATTCCCACAAAGGTTTTATCTATGCGTGTGGATGTGACTATCACTCAACCCGGTGATGATTTTGAAGACTACGACGAAGAATACGAAGACGAAGATCACGATGATGATGATGAAGATCATGGGTTGGTGCAGGCAGCGGCAAAGTCACAACACGTTGAGGGGTTGGAGACGGTTGAACAAGAAGGGTGTAAAAGGTGTGCGATTTGTCTCGAGGATTTTAATGTTGGTGTTCGCATGCCTTGTTTGCACATGTTTCATGAAAACTGCATCGGTGAGTGGTTGCAAATAGGCAATTCTTGCCCCTTGTGTCGGTTTAAGATGCCTCCTCAAATGGGATAA 651 0.4624 MDEYYCCAYPHISASDFASETPFCPDDQRFSVEVAYTNMYVLNAREFETSEYTTHHSFSNISKDEIMQETTIVSWLSSMGVPSEAHRSVVAKVLQCARGMANDRIPTKVLSMRVDVTITQPGDDFEDYDEEYEDEDHDDDDEDHGLVQAAAKSQHVEGLETVEQEGCKRCAICLEDFNVGVRMPCLHMFHENCIGEWLQIGNSCPLCRFKMPPQMG* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0819 216 MobiDBLite consensus disorder prediction 120 142 - -
Gso10g0819 216 SUPERFAMILY RING/U-box 169 214 - -
Gso10g0819 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 214 IPR013083 -
Gso10g0819 216 SMART ring_2 170 207 IPR001841 -
Gso10g0819 216 MobiDBLite consensus disorder prediction 122 142 - -
Gso10g0819 216 PANTHER F6A14.12 PROTEIN-RELATED 48 213 - -
Gso10g0819 216 Pfam Ring finger domain 169 208 IPR001841 -
Gso10g0819 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 213 - -
Gso10g0819 216 ProSiteProfiles Zinc finger RING-type profile. 170 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0819 Gso-Chr10 12082258 12083005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0819 101 215 C3H Transcription Factor Family AT3G47990 32.540 8.19e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0819 - - lang:109344708 211.846