Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0775 ATGGAGTCAAACAACATGCCAGACTTGAACGGTGTCGCTAAGAAGACTAAAGGCCGACAAAAGATCGAAATGAAGAAGATGAGAAACGAGAGTAACCTTCGGGTGACATTCTCGAAGCGTCGCACTGGGGTTTTCAAGAAAGCCAGTGAGCTTGCAACCCTTTGTGGCGTGGATGTCGCTGTGATTATGTTCTCACCCGGTAATCGAGTATTTTCGTTTGGCAGTCCCAGTGTTGATTCTGTTGTCCAACGCTATAAGACACAGGGCCCACCTCCCCTCCTTACCTTGGACCTCAACAAGGTGCACTCCACTGCGGACGAAGTTGAGCTCCACACACACCTCCACTGCTTGTCCAACCAAATTGCTATTGAGAAGAAGCGCACAAAGGATTTAAATCATTTAGCGAAGGCTGCAGAGGATCAGTTCTGGTGGGCTAGGCCTATTGAAAGCATGACCGATTCCCAACTTGACAAGTATAAGAAGATGTTAGAGGAGTTTAAGAGACAACTCAAAGAAAAATGTGGGAACCTCAACTGA 537 0.4711 MESNNMPDLNGVAKKTKGRQKIEMKKMRNESNLRVTFSKRRTGVFKKASELATLCGVDVAVIMFSPGNRVFSFGSPSVDSVVQRYKTQGPPPLLTLDLNKVHSTADEVELHTHLHCLSNQIAIEKKRTKDLNHLAKAAEDQFWWARPIESMTDSQLDKYKKMLEEFKRQLKEKCGNLN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0775 178 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 73 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 PANTHER MADS BOX PROTEIN 17 170 - -
Gso10g0775 178 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Gso10g0775 178 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gso10g0775 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 170 - -
Gso10g0775 178 MobiDBLite consensus disorder prediction 1 21 - -
Gso10g0775 178 SUPERFAMILY SRF-like 18 96 IPR036879 GO:0003677|GO:0046983
Gso10g0775 178 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Gso10g0775 178 Coils Coil 156 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0775 Gso-Chr10 10914062 10914598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0775 12 168 Type I MADS-box Gene Family AT5G60440 47.853 5.31e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso10g0775 SRF-TF 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0775 - - gmx:102661396 360.918