Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0728 ATGGCGATGCAAACCGTTTACCTGAAAGAACATGAAGGACTTGTCTACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCGTTCGAGATTTCCAACTACGTCGACCAATTCCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACATACAACAACCCAGTTTACCATCTTTCCAGGTGATGCAGAAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCAATGATCTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTTTGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGACGGACCAACTTACGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCTATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATTAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCATTGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAGGCTCTACTAATGGAAATGGTAGAAATGAAAGCAAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCATTCTGAGGTTGGAACTTTAAATTCCTCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGTTTTTCTGTCAATCGTCTTGGATCTTCCGTTCACTCCCTAGTGGACATGGTATTATCACGCCCACTAAATGGGTTGCAGCAGTATCAGGTAACTGCTGCAACCTTAAAGTTTGATTAG 966 0.44 MAMQTVYLKEHEGLVYNSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSFEISNYVDQFPAGKQAVRGVEQLLDKGHTTTQFTIFPGDAENPQATLSLQSSLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAFGPQISGRIMLPINLTSDDGPTYVNAKQYHGIIRRRLSRAKAVLENKMIKRRKPYMHESRHLHALRRPRGCGGRFLNTKGSTNGNGRNESKVNKTGGRQLQSSASQSSEVLHSEVGTLNSSKETNRSSPNISGSEVTSMYSREGFDGFSVNRLGSSVHSLVDMVLSRPLNGLQQYQVTAATLKFD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0728 321 Gene3D - 154 216 - -
Gso10g0728 321 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 320 IPR001289 GO:0003700|GO:0006355
Gso10g0728 321 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
Gso10g0728 321 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 157 211 IPR001289 GO:0003700|GO:0006355
Gso10g0728 321 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 320 - -
Gso10g0728 321 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
Gso10g0728 321 MobiDBLite consensus disorder prediction 202 272 - -
Gso10g0728 321 MobiDBLite consensus disorder prediction 212 272 - -
Gso10g0728 321 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
Gso10g0728 321 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0728 Gso-Chr10 10088948 10093915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0728 1 301 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.099 4.20e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso10g0728 CBFB_NFYA 4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0728 K08064 - gmx:100794755 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1656 2 39051870 39057368 Gso10g0728 10 10088948 10093915 GST
Gso19g1684 19 45751065 45755495 Gso10g0728 10 10088948 10093915 PCT
Gso3g1714 3 42998723 43003612 Gso10g0728 10 10088948 10093915 PCT
Gso10g0728 10 10088948 10093915 Gso19g1684 19 45751065 45755495 PCT
Gso10g0728 10 10088948 10093915 Gso3g1714 3 42998723 43003612 PCT