Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0726 ATGTGGTTCTCCATGGCTGCTTCAACTTCAACTGCTACTTCCTCCCTTATCTGCAACATTTCACTCACCTTTAACTTCCCACACACACTCATACCCTCGAAACCCCTCAATCTCAACCCCCAACTATTCTTTGCTTCTCCCCTCTCACTCTCACTTTACCATTTCCCCCTCTCTTCACTTTCCTTCCAAGACACTCAAAAACCCCTTCAACGCGAAACCTTCCAAAAACCAGAGCCGAATGCGTCACATACAAACCAATCCTCCAGACTCTTTGTGGGAAACTTGCCTTACTCATTGCTCTCTTCCCAGTTGGCTCAGCGGTTCGGAGAGGCTGGCAATGTTGTATCCGTGGAGATTGTGTATGATGACATCATGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCATGGAGGATGCTGAACGAGCGATTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGAATTATGAAGGTAAACTTCACAGCGATACCCAAAAGAGGCAAACGGCTAGTAATGGGTTCAAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTCTGACTTCACAAGATCTTAGGGATGCCTTTGCTGAGCAGCCTGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGAACAGTGGAAGGTCTAGGGGATATGGGTTTGTCTCTTTTGAAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGAATGGTGTGGAGGTTCAAGGCCGGCCCTTACGGCTGAATCTAGCTACAGATAAGAATACTTCATCTCCTCTGGTAATTCATTAA 828 0.4626 MWFSMAASTSTATSSLICNISLTFNFPHTLIPSKPLNLNPQLFFASPLSLSLYHFPLSSLSFQDTQKPLQRETFQKPEPNASHTNQSSRLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMFDGSEIGGRIMKVNFTAIPKRGKRLVMGSNYRGFVDSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNSMNGVEVQGRPLRLNLATDKNTSSPLVIH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0726 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 259 IPR000504 GO:0003723
Gso10g0726 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gso10g0726 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Gso10g0726 275 SUPERFAMILY RNA-binding domain, RBD 184 268 IPR035979 GO:0003676
Gso10g0726 275 Gene3D - 177 271 IPR012677 -
Gso10g0726 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Gso10g0726 275 PANTHER OS02G0815200 PROTEIN 5 269 - -
Gso10g0726 275 Gene3D - 58 173 IPR012677 -
Gso10g0726 275 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 269 - -
Gso10g0726 275 SUPERFAMILY RNA-binding domain, RBD 78 164 IPR035979 GO:0003676
Gso10g0726 275 SMART rrm1_1 89 162 IPR000504 GO:0003723
Gso10g0726 275 SMART rrm1_1 188 261 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0726 Gso-Chr10 10053284 10058694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0726 90 267 Eukaryotic Initiation Factors Gene Family AT3G16380 30.337 5.50e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0726 - - gmx:100789843 544.658